| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 1,335,398 | A→G | D195G (GAT→GGT) | lapB → | lipopolysaccharide assembly protein LapB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,335,398 | 0 | A | G | 100.0% | 16.2 / NA | 6 | D195G (GAT→GGT) | lapB | lipopolysaccharide assembly protein LapB |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (3/3); total (3/3) | |||||||||||
GAAGCTGGGTAAAGATAAACAGCGCGTCGAAATTGCCCATTTCTACTGTGAGTTAGCCCTGCAGCATATGGCCAGCGACGATCTCGATCGTGCCATGACCTTGCTAAAAAAAGGGGCGGCGGCAGATAAAAACAGCGCCCGCGTATCCA > NZ_CP009273/1335318‑1335466 | gAAGCTGGGTAAAGATAAACAGCGCGTCGAAATTGCCCATTTCTACTGTGAGTTAGCCCTGCAGCATATGGCCAGCGACGGTCTCGATCg < 1:107624/90‑1 (MQ=255) gcgTCGAAATTGCCCATTTCTACTGTGAGTTAGCCCTGCAGCATATGGCCAGCGACGGTCTCGATc > 1:339784/1‑66 (MQ=255) gcgTCGAAATTGCCCATTTCTACTGTGAGTTAGCCCTGCAGCATATGGCCAGCGACGGTCTCGATc < 2:339784/66‑1 (MQ=255) gAGTTAGCCCTGCAGCATATGGCCAGCGACGGTCTCGATCGTGCCATGACCTTGCTAAAAAAAGGGGCGGCGGCAGATAAAAACAGCGcc > 2:272398/1‑90 (MQ=255) ttAGCCCTGCAGCATATGGCCAGCGACGGTCTCGATCGTGCCATGACCTTGCTAAAAAAAGGGGCGGCGGCAGATAAAAACAGCGCCcgc < 1:554741/90‑1 (MQ=255) tGCAGCATATGGCCAGCGACGGTCTCGATCGTGCCATGACCTTGCTAAAAAAAGGGGCGGCGGCAGATAAAAACAGCGCCCGCGTATCCa > 1:90526/1‑90 (MQ=255) | GAAGCTGGGTAAAGATAAACAGCGCGTCGAAATTGCCCATTTCTACTGTGAGTTAGCCCTGCAGCATATGGCCAGCGACGATCTCGATCGTGCCATGACCTTGCTAAAAAAAGGGGCGGCGGCAGATAAAAACAGCGCCCGCGTATCCA > NZ_CP009273/1335318‑1335466 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |