| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 1,579,109 | A→C | G545G (GGT→GGG) | ydeP ← | acid resistance putative oxidoreductase YdeP |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,579,109 | 0 | A | C | 100.0% | 91.0 / NA | 25 | G545G (GGT→GGG) | ydeP | acid resistance putative oxidoreductase YdeP |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base C (13/12); total (13/12) | |||||||||||
CAGATACTCCCAGGCTACCACGCTCTGGGGTAGTGCTGCCTGCGCGATTCCCGCGACCACTGCACACTCTGATTTCAGCATTACACCGGCGGGTTTTAACACGCCACGCGAGGCATGAATCATCGACATTGAATCCTCAACGGTTACCGCCTGCGC > NZ_CP009273/1579025‑1579180 | caGATACTCCCAGGCTACCACGCTCTGGGGTAGTGCTGCCTGCGCGATTCCCGCGACCACTGCACACTCTGATTTCAGCATTACCCcggc < 2:361901/90‑1 (MQ=255) tCCCAGGCTACCACGCTCTGGGGTAGTGCTGCCTGCGCGATTCCCGCGACCACTGCACACTCTGATTTCAGCATTACCCCGGCGGGtttt < 2:169714/90‑1 (MQ=255) cAGGCTACCACGCTCTGGGGTAGTGCTGCCTGCGCGATTCCCGCGACCACTGCACACTCTGATTTCAGCATTACCCCGGCGGGTTTTAac < 2:357443/90‑1 (MQ=255) aCCACGCTCTGGGGTAGTGCTGCCTGCGCGATTCCCGCGACCACTGCACACTCTGATTTCAGCATTACCCCGGCGGGTTTTAAcacgcca > 2:406785/1‑90 (MQ=255) aCGCTCTGGGGTAGTGCTGCCTGCGCGATTCCCGCGACCACTGCACACTCTGATTTCAGCATTACCCCGGCGGGTTTTAAcacgccacgc < 1:610876/90‑1 (MQ=255) ctctGGGGTAGTGCTGCCTGCGCGATTCCCGCGACCACTGCACACTCTGATTTCAGCATTACCCCGGCGGGTTTTAACACGCCACGCGAg > 1:154970/1‑90 (MQ=255) gTGCTGCCTGCGCGATTCCCGCGACCACTGCACACTCTGATTTCAGCATTACCCCGGCGGGTTTTAAcacgccacgc > 1:255085/1‑77 (MQ=255) gTGCTGCCTGCGCGATTCCCGCGACCACTGCACACTCTGATTTCAGCATTACCCCGGCGGGTTTTAAcacgccacgc < 2:255085/77‑1 (MQ=255) gTGCTGCCTGCGCGATTCCCGCGACCACTGCACACTCTGATTTCAGCATTACCCCGGCGGGTTTTAACACGCCACGCGAGGCATGAatca > 1:121029/1‑90 (MQ=255) gTGCTGCCTGCGCGATTCCCGCGACCACTGCACACTCTGATTTCAGCATTACCCCGGCGGGTTTTAACACGCCACGCGAGGCATGAatca > 1:439811/1‑90 (MQ=255) gcctgcGCGATTCCCGCGACCACTGCACACTCTGATTTCAGCATTACCCcggc < 1:302640/53‑1 (MQ=255) gcctgcGCGATTCCCGCGACCACTGCACACTCTGATTTCAGCATTACCCcggc > 2:302640/1‑53 (MQ=255) gcctgcGCGATTCCCGCGACCACTGCACACTCTGATTTCAGCATTACCCCGGCGGGTTTTAACACGCCACGCGAGGCATGAATCATCGAc > 1:431605/1‑90 (MQ=255) cgcgATTCCCGCGACCACTGCACACTCTGATTTCAGCATTACCCcggc > 1:267483/1‑48 (MQ=255) cgcgATTCCCGCGACCACTGCACACTCTGATTTCAGCATTACCCcggc < 2:267483/48‑1 (MQ=255) cgcgATTCCCGCGACCACTGCACACTCTGATTTCAGCATTACCCCGGCGGGTTTTAAcacgccacgc < 2:478908/67‑1 (MQ=255) cgcgATTCCCGCGACCACTGCACACTCTGATTTCAGCATTACCCCGGCGGGTTTTAAcacgccacgc > 1:478908/1‑67 (MQ=255) ccACTGCACACTCTGATTTCAGCATTACCCCGGCGGGTTTTAACACGCCACGCGAGGCATGAATCATCGACATTGAATCCTCAACGGTTa < 1:406785/90‑1 (MQ=255) ctctGATTTCAGCATTACCCCGGCGGGTTTTAACACGCCACGCGa > 1:84650/1‑45 (MQ=255) ctctGATTTCAGCATTACCCCGGCGGGTTTTAACACGCCACGCGa < 2:84650/45‑1 (MQ=255) ctctGATTTCAGCATTACCCCGGCGGGTTTTAACACGCCACGCGAGGCATGAATCATCGACATTGAATCCTCAACGGTTACCGCCTgcgc > 1:257136/1‑90 (MQ=255) tGATTTCAGCATTACCCCGGCGGGTTTTAAcacgccacgc > 1:406871/1‑40 (MQ=39) tGATTTCAGCATTACCCCGGCGGGTTTTAAcacgccacgc < 2:406871/40‑1 (MQ=39) ttACCCCGGCGGGTTTTAACACGCCACGCGAGGCATGAATCATCGACATTGAATCCTCAAc < 2:400215/61‑1 (MQ=255) ttACCCCGGCGGGTTTTAACACGCCACGCGAGGCATGAATCATCGACATTGAATCCTCAAc > 1:400215/1‑61 (MQ=255) | CAGATACTCCCAGGCTACCACGCTCTGGGGTAGTGCTGCCTGCGCGATTCCCGCGACCACTGCACACTCTGATTTCAGCATTACACCGGCGGGTTTTAACACGCCACGCGAGGCATGAATCATCGACATTGAATCCTCAACGGTTACCGCCTGCGC > NZ_CP009273/1579025‑1579180 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |