| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NZ_CP009273 | 1,613,631 | Δ3 bp | coding (255‑257/435 nt) | marR → | multiple antibiotic resistance transcriptional regulator MarR |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_CP009273 | 1613631 | 1613633 | 3 | 35 [0] | [0] 35 | marR | multiple antibiotic resistance transcriptional regulator MarR |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 1613630 | 0 (0.000) | 35 (0.920) | 23/162 | 0.3 | 100% | coding (254/435 nt) | marR | multiple antibiotic resistance transcriptional regulator MarR |
| ? | NZ_CP009273 | 1613634 = | 0 (0.000) | coding (258/435 nt) | marR | multiple antibiotic resistance transcriptional regulator MarR | |||||
ACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP009273/1613542‑1613630‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATATGTGAACAATGCCATCAA > NZ_CP009273/1613634‑1613715 ACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAG < 1:526455/90‑1 CTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAGT > 2:812432/1‑90 CCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAGTTG > 2:248765/1‑90 GGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAGTTGCC > 2:299262/1‑90 GTATTGTCGGTCGACCTGGGAGCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAGTTGCCGAACCCGAATGACAAG < 2:563487/90‑1 GTATTGTCGGTCGACCTGGGAGCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAGTTGCCGAACCCGAATGACAAG < 2:291799/90‑1 TTGTCGGTCGACCTGGGAGCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAGTTGCCGAACCCGAATGACAAGCGC < 1:219770/90‑1 TTGTCGGTCGACCTGGGAGCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAGTTGCCGAACCCGAATGACAAGCGC > 2:1123391/1‑90 GGTCGACCTGGGAGCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAGTTGCCGAACCCGAATGACAAGCGCGGCGT > 2:1077598/1‑90 GTCGACCTGGGAGCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAGTTGCCGAACCCGAATGACAAGCGCGGCGTA < 1:1077598/90‑1 ACCTGGGAGCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGG > 2:59393/1‑90 TGGGAGCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAA < 1:1031507/90‑1 TGGGAGCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAA < 1:848912/90‑1 ACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAGTTGCCGAACCCGAATGACAAGCGCGGCGTA > 1:604731/1‑76 ACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAGTTGCCGAACCCGAATGACAAGCGCGGCGTA < 2:604731/76‑1 GACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCAC > 2:292597/1‑90 TGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCG < 1:248765/90‑1 GGATCGCCTGGTCTGTAAAGGCTGGGTGGAGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGC > 2:862917/1‑90 GGATCGCCTGGTCTGTAAAGGCTGGGTGGAGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGC > 2:556894/1‑90 GGATCGCCTGGTCTGTAAAGGCTGGGTGGAGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGC > 1:706279/1‑90 GATCGCCTGGTCTGTAAAGGCTGGGTGGAGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCA < 1:556894/90‑1 ATCGCCTGGTCTGTAAAGGCTGGGTGGAGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAA > 1:870621/1‑90 TCGCCTGGTCTGTAAAGGCTGGGTGGAGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAAT > 2:745094/1‑90 GCCTGGTCTGTAAAGGCTGGGTGGAGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACTGGCGGCGCGGCAATAT > 1:550223/1‑90 GCCTGGTCTGTAAAGGCTGGGTGGAGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAA < 1:422109/63‑1 GCCTGGTCTGTAAAGGCTGGGTGGAGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAA > 2:422109/1‑63 CCTGGTCTGTAAAGGCTGGGTGGAGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACTGGCGGCGCGGCAATATG < 2:550223/90‑1 GTAAAGGCTGGGTGGAGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATATG > 2:519836/1‑82 GTAAAGGCTGGGTGGAGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATATG < 1:519836/82‑1 GGCTGGGTGGAGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATATGTGAACAATGCCAT > 2:776694/1‑90 GGCTGGGTGGAGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCA > 2:1162214/1‑72 GGCTGGGTGGAGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCA < 1:1162214/72‑1 TGGGTGGAGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATATGTGAACAATGCCATCAA > 1:3680/1‑90 TGGGTGGAGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATATGTGAACAATGCCATCAA > 1:517816/1‑90 TGGGTGGAGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATATGTGAACAATGCCATCAA > 2:70808/1‑90 ACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP009273/1613542‑1613630‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATATGTGAACAATGCCATCAA > NZ_CP009273/1613634‑1613715 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |