| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 4,091,442 | 0 | G | T | 48.0% | 24.5 / 14.3 | 25 | intergenic (+84/‑176) | sodA/kdgT | superoxide dismutase [Mn]/2‑keto‑3‑deoxygluconate transporter |
| Reads supporting (aligned to +/- strand): ref base G (2/11); new base T (12/0); total (14/11) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.02e-05 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
AAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTAT > NZ_CP009273/4091353‑4091521 | aaaTAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTtg < 1:1104893/90‑1 (MQ=255) aTGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGGTTTTTTTTGGTCAATTTTAAAAAAAAAACAAt > 1:172047/1‑90 (MQ=255) gAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGGGGGTTTTTTTTGTTCAATTTTAaaaaaaaaaaaaaaa > 1:998938/1‑87 (MQ=255) aGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGGTTTTTTTTGATCAATTTTAAAAAAAAAAAAAAGAt > 1:115432/1‑90 (MQ=255) gTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTTTGATCAATTTTAAAAAAAAAAAAATGATCCGa > 2:778015/1‑90 (MQ=255) gTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGGTCAATTTTAAAATAAAAACAATAATCCGa > 2:504102/1‑90 (MQ=255) gTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGGGGGTTTTTTTTGATCAATTTTAAAAAAAAAACAATGATCCGa > 2:1049053/1‑90 (MQ=255) ataGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGata < 2:248177/90‑1 (MQ=255) ggCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGGTTTTTTTTGATCAATTTCAAAAAAAAAAAAAAGATCCCataaaa > 2:556573/1‑90 (MQ=255) ggCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGGGGGTTTTTTTTTTTTAATTTTAAAAAAAAAAAAAAGATCCGataaaa > 1:645010/1‑90 (MQ=255) ccGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGGTTTTTTTTGATCAATTTCAAAATAAAAAAAATGATCCCataaaaat > 2:479837/1‑90 (MQ=255) ccGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGGTTTTTTGTGATCAATTTCAAAATAAAAAAAATGATCCGataaaaaa > 2:417173/1‑89 (MQ=255) cATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGGGGGTTTTTTTTGATCAATTTTAAAAAAAAAAAAAAGATCCGataaaaaaaaa > 1:100622/1‑90 (MQ=255) gCTTAAAAAATGAACCATCGCCAACGGCGGTGGGTTTTTTTTGATCAATTTTAAAATAAAAACAATGATCCGATAAAAAAAAAAAAGCgg > 2:1042170/1‑89 (MQ=255) cTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGtt < 2:989049/90‑1 (MQ=255) aaaTGAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAAtt < 2:115432/90‑1 (MQ=255) tGAACCATCGCCAACGGCGGTGGTTTTTTTTTGATCAATTTCAAAAAAAAAACAAAGATCCGATAAAAAAAAAAAAGCGTTTTAATTGAt > 1:589699/1‑90 (MQ=255) aaCCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAAGAGCGTTTCAATTGAtgt < 1:1042170/90‑1 (MQ=255) aaCCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGAtgt < 1:1049053/90‑1 (MQ=255) tCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGttt < 1:197008/90‑1 (MQ=255) tCGCCAACGGCGGTGGGTTTTTTTTGATCAATTTTAAAATAAAAACAATGATCCGATAAAAAAAAAAAAGCGTTTTAATTTATGTGGttt > 1:408302/1‑90 (MQ=255) aaCGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATc < 2:172047/90‑1 (MQ=255) aaCGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATc < 1:928840/90‑1 (MQ=255) aaCGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATc < 2:469697/90‑1 (MQ=255) ggcggTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACt < 1:479837/90‑1 (MQ=255) tggtTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTAt < 2:116726/90‑1 (MQ=255) | AAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTAT > NZ_CP009273/4091353‑4091521 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |