Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NZ_CP009273 | 1,975,994 | 0 | C | G | 55.6% | 4.3 / 10.4 | 9 | intergenic (‑126/+41) | otsB/araH | trehalose‑phosphatase/arabinose ABC transporter permease AraH |
Reads supporting (aligned to +/- strand): ref base C (0/4); new base G (5/0); total (5/4) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 7.94e-03 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.17e-02 | |||||||||||
Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
GTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGGAAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACA > NZ_CP009273/1975939‑1976041 | gtgtGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGGTATGGGGGGGAAAAAAGGTAAAATTTTTGAGaaa > 2:46362/1‑90 (MQ=255) gtgtGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGGTATGGGGGGGAAAAAAACTAAAATGTTTTAGaaa > 2:529529/1‑90 (MQ=255) gtgtGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGGGGGGTTTTGGGGGGAAAAAAACTTAAATGGTGTAGaaa > 1:428716/1‑90 (MQ=255) tgtgACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGGGGGGTAGGGGGGGGAAAAAAGCCAAAAAGTTGTAGaaaa > 1:199677/1‑90 (MQ=255) gtgACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGGAAAAAACGCTAAATTGTTGCAGaaaaa < 1:276440/90‑1 (MQ=255) gtgACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGGAAAAAACGCTAAATTGTTGCAGaaaaa < 1:527322/90‑1 (MQ=255) gtgACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGGAAAAAACGCTAAATTGTTGCAGaaaaa < 2:39012/90‑1 (MQ=255) ggTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTTGGTATGGGGGGGAAAAAAACTAAATTGTTTCAGAAAAAAAAATCAg > 2:276440/1‑90 (MQ=255) cGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGGAAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACa < 2:290515/90‑1 (MQ=255) | GTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGGAAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACA > NZ_CP009273/1975939‑1976041 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |