| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 2282398 = | NA (NA) | 42 (1.510) | 22/166 | 0.2 | 95.5% | pseudogene (3/2532 nt) | yejO | autotransporter YejO |
| ? | NZ_CP009273 | = 3629487 | 2 (0.070) | intergenic (+234/+81) | yhiM/yhiN | DUF2776 domain‑containing protein/NAD(P)/FAD‑dependent oxidoreductase | |||||
CATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP009273/2282486‑2282398‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTAATGAGCCCGTGAACTGAAACCCTCCATGCTTAATATAAGGTGGATGGAAAGGTGATTGAAAACTCACTCAGTGGCCAGATCTTTA < NZ_CP009273/3629487‑3629400 CATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCC < 1:146291/90‑1CATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCC < 2:209019/90‑1 ATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCT < 2:681753/90‑1 ATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCT > 1:789440/1‑90 TTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGCCTGGGCCAGCCGGGAAGAATTTCCCCGCTTATTCGCACCTTCCCTA > 1:106419/1‑90 TTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTA > 1:164924/1‑90 TTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTA > 1:286668/1‑90 TTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTA < 1:292909/90‑1 TTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAA > 1:33136/1‑90 TTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAA > 1:13156/1‑90 AAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGT < 1:175385/90‑1 TCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTG > 1:352074/1‑90 GCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAA < 1:809330/90‑1 AACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTC > 1:801204/1‑90 CATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCA < 2:21760/90‑1 CATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCA < 2:151920/90‑1 CATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCA < 1:676866/90‑1 AAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCATGCT < 2:352074/90‑1 AGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCATGCTT < 2:789440/90‑1 ATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCATGCTTAATA > 1:783577/1‑90 AATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCATGCTTAATATAAG < 2:76744/90‑1 ATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCATGCTTAATATAAGG < 1:280820/90‑1 ATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCATGCTTAATATAAGG < 2:789534/90‑1 AGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCATGCTTAATATAAGGTGGATGG > 2:121185/1‑90 AGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGA < 1:367507/55‑1 AGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGA > 2:367507/1‑55 TCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCATGCTTAATATAAGGTGGATGGAA < 1:251195/90‑1 TCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCATGCTTAATATAAGGTGGATGGAA < 2:471168/90‑1 AAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCATGCTTAATATAAGGTG > 2:594790/1‑74 AAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCATGCTTAATATAAGGTG < 1:594790/74‑1 AGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCATGCTTAATATAAGGTGGATGGAAAGGTGATTGA < 2:801204/90‑1 TCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCA > 2:212588/1‑51 TCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCA < 1:212588/51‑1 CGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCATGCTTAATATAAGGTGGATGGAAAGGTGATTGAAAACTCACTC < 2:783577/90‑1 GCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCATGCTTAATATAAGGTGGATGGAAAGGTGATTGAAAACTCACTCA > 2:751796/1‑90 GCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCATGCTTAATATAAGGTGGATGGAAAGGTGATTGAAAACTCACTCA > 1:621691/1‑90 GCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAA < 2:191867/39‑1 GCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAA > 1:191867/1‑39 CTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCATGCTTAATATAAGGTGGATGGAAAGGTGATTGAAAACTCACTCAG < 2:391017/90‑1 CTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCATGCTTAATATAAGGTGGATGGAAAGGTGATTGAAAACTCACTCAG < 1:121185/90‑1 CGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCATGCTTAATATAAGGTGGATAGAAAGGTGATTGAAAACTCACTCAGTGGCCA < 1:754722/90‑1 CCCTAATGAGCCCGTGAACTGAAACCCTCCATGCTTAATATAAGGTGGATGGAAAGGTGATTGAAAACTCACTCAGTGGCCAGATCTTTA > 1:654162/1‑90 CATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP009273/2282486‑2282398‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTAATGAGCCCGTGAACTGAAACCCTCCATGCTTAATATAAGGTGGATGGAAAGGTGATTGAAAACTCACTCAGTGGCCAGATCTTTA < NZ_CP009273/3629487‑3629400 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |