| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 1,613,723 | G→C | G116A (GGC→GCC) | marR → | multiple antibiotic resistance transcriptional regulator MarR |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,613,723 | 0 | G | C | 100.0% | 38.3 / NA | 11 | G116A (GGC→GCC) | marR | multiple antibiotic resistance transcriptional regulator MarR |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base C (5/6); total (5/6) | |||||||||||
TGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATATGTGAACAATGCCATCAATTAGTTGGCCAGGACCTGCACCAAGAATTAACAAAAAACCTGACGGCGGACGAAGTGGCAACACTTGAGTATTTGCTTAAGAAAGTCCTGCCGTAAA > NZ_CP009273/1613636‑1613812 | tGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATATGTGAACAATGCCATCAATTAGTTGccc > 1:439806/1‑90 (MQ=255)tGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATATGTGAACAATGCCATCAATTAGTTGccc > 2:623810/1‑90 (MQ=255) gCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATATGTGAACAATGCCATCAATTAGTTGCCCa < 1:170381/90‑1 (MQ=255) cccGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATATGTGAACAATGCCATCAATTAGTTGCCCAGGACCt < 1:514653/90‑1 (MQ=255) aaaaCTTACCACCGGCGGCGCGGCAATATGTGAACAATGCCATCAATTAGTTGCCCAGGACCTGCACCAAGAATTAACAAAAAACCTGAc > 2:359172/1‑90 (MQ=255) ttACCACCGGCGGCGCGGCAATATGTGAACAATGCCATCAATTAGTTGCCCAGGACCTGCACCAAGAATTAACAAAAAACCTGAcggcgg > 1:312860/1‑90 (MQ=255) ggcggcGCGGCAATATGTGAACAATGCCATCAATTAGTTGCCCAGGACCTGCACCAAGAATTAACAAAAAACCTGACGGCGGACGAAGTg < 2:439806/90‑1 (MQ=255) ggcgcggcAATATGTGAACAATGCCATCAATTAGTTGCCCAGGACCTGCACCAAGAATTAACAAAAAACCTGACGGCGGACGAAGTGGCa < 1:575031/90‑1 (MQ=255) gcgcggcAATATGTGAACAATGCCATCAATTAGTTGCCCAGGACCTGCACCAAGAATTAACAAAAAACCTGACGGCGGACGAAGTGGCaa < 1:529547/90‑1 (MQ=255) cgcggcAATATGTGAACAATGCCATCAATTAGTTGCCCAGGACCTGCACCAAGAATTAACAAAAAACCTGACGGCGGACGAAGTGGCAac < 2:326852/90‑1 (MQ=255) aaCAATGCCATCAATTAGTTGCCCAGGACCTGCACCAAGAATTAACAAAAAACCTGACGGCGGACGAAGTGGCAACACTTGAGTATTTGc > 2:2825/1‑90 (MQ=255) aTGCCATCAATTAGTTGCCCAGGACCTGCACCAAGAATTAACAAAAAACCTGACGGCGGACGAAGTGGCAACACTTGAGTATTTGCTTaa > 1:200981/1‑90 (MQ=255) aTGCCATCAATTAGTTGCCCAGGACCTGCACCAAGAATTAACAAAAAACCTGACGGCGGACGAAGTGGCAACACTTGAGTATTTGCTTaa > 2:534869/1‑90 (MQ=255) gCCAGGACCTGCACCAAGAATTAACAAAAAACCTGACGGCGGACGAAGTGGCAACACTTGAGTATTTGCTTAAGAAAGTCCTGCCGTaaa > 1:528008/1‑90 (MQ=255) | TGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATATGTGAACAATGCCATCAATTAGTTGGCCAGGACCTGCACCAAGAATTAACAAAAAACCTGACGGCGGACGAAGTGGCAACACTTGAGTATTTGCTTAAGAAAGTCCTGCCGTAAA > NZ_CP009273/1613636‑1613812 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |