| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 481433 = | 0 (0.000) | 32 (1.520) | 22/166 | 0.1 | 100% | coding (217/648 nt) | acrR | multidrug efflux transporter transcriptional repressor AcrR |
| ? | NZ_CP009273 | = 571241 | NA (NA) | coding (1041/1068 nt) | BW25113_RS02855 | porin | |||||
CACCGTGGATTCAAGAACATGAATTAATATCTCTCTTAATACTGAGAGTGGATCGCCAGGGAATTTTGCCTGATACTCAAGCTCTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP009273/481519‑481433‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACC < NZ_CP009273/571241‑571156 CACCGTGGATTCAAGAACATGAATTAATATCTCTCTTAATACTGAGAGTGGATCGCCAGGGAATTTTGCCTGATACTCAAGCTCTAGGGA > 2:123198/1‑90 GTGGATTCAAGAACATGAATTAATATCTCTCTTAATACTGAGAGTGGATCGCCAGGGAATTTTGCCTGATACTCAAGCTCTAGGGAAGGT > 2:125533/1‑90 CATGAATTAATATCTCTCTTAATACTGAGAGTGGATCGCCAGGGAATTTTGCCTGATACTCAAGCTCTAGGGAAGGTGCGAACAAGTCCC > 2:51892/1‑90 AATTAATATCTCTCTTAATACTGAGAGTGGATCGCCAGGGAATTTTGCCTGATACTCAAGCTCTAGGGAAGGTGCGAACAAGTCCCTGAT > 1:500970/1‑90 TCTCTCTTAATACTGAGAGTGGATCGCCAGGGAATTTTGCCTGATACTCAAGCTCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATC < 2:141474/90‑1 TCTCTTAATACTGAGAGTGGATCGCCAGGGAATTTTGCCTGATACTCAAGCTCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCAT > 2:535382/1‑90 CTCTTAATACTGAGAGTGGATCGCCAGGGAATTTTGCCTGATACTCAAGCTCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATG > 1:558222/1‑90 TAATACTGAGAGTGGATCGCCAGGGAATTTTGCCTGATACTCAAGCTCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTG < 2:47640/90‑1 TAATACTGAGAGTGGATCGCCAGGGAATTTTGCCTGATACTCAAGCTCTAGGGAA > 1:143600/1‑55 TAATACTGAGAGTGGATCGCCAGGGAATTTTGCCTGATACTCAAGCTCTAGGGAA < 2:143600/55‑1 AATACTGAGAGTGGATCGCCAGGGAATTTTGCCTGATACTCAAGCTCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGT < 1:123198/90‑1 TGAGAGTGGATCGCCAGGGTATTTTGCCTGATACTCAAGCTCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCT > 1:194046/1‑90 TGAGAGTGGATCGCCAGGGAATTTTGCCTGATACTCAAGCTCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCT > 2:81735/1‑90 TGAGAGTGGATCGCCAGGGAATTTTGCCTGATACTCAAGCTCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCT > 2:530729/1‑90 TGAGAGTGGATCGCCAGGGAATTTTGCCTGATACTCAAGCTCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCT > 2:520511/1‑90 TGAGAGTGGATCGCCAGGGAATTTTGCCTGATACTCAAGCTCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCT > 2:490335/1‑90 TGAGAGTGGATCGCCAGGGAATTTTGCCTGATACTCAAGCTCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCT > 2:155420/1‑90 TGAGAGTGGATCGCCAGGGAATTTTGCCTGATACTCAAGCTCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCT > 1:234295/1‑90 TGAGAGTGGATCGCCAGGGAATTTTGCCTGATACTCAAGCTCTAGGGAAGGTGCGAACAAGTCCCT > 2:454962/1‑66 TGAGAGTGGATCGCCAGGGAATTTTGCCTGATACTCAAGCTCTAGGGAAGGTGCGAACAAGTCCCT < 1:454962/66‑1 GAGAGTGGATCGCCAGGGAATTTTGCCTGATACTCAAGCTCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTG > 2:392858/1‑90 GAGAGTGGATCGCCAGGGAATTTTGCCTGATACTCAAGCTCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTG > 2:489970/1‑90 GAGTGGATCGCCAGGGAATTTTGCCTGATACTCAAGCTCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGA < 2:234295/90‑1 GAGTGGATCGCCAGGGAATTTTGCCTGATACTCAAGCTCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGA < 2:48427/90‑1 GAGTGGATCGCCAGGGAATTTTGCCTGATACTCAAGCTCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGA < 2:500970/90‑1 GTGGATCGCCAGGGAATTTTGCCTGATACTCAAGCTCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGC < 1:489970/90‑1 GATCGCCAGGGAATTTTGCCTGATACTCAAGCTCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCAT > 2:5170/1‑90 CGCCAGGGAATTTTGCCTGATACTCAAGCTCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGA > 1:219249/1‑90 GAATTTTGCCTGATACTCAAGCTCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGT < 1:213237/90‑1 ATTTTGCCTGATACTCAAGCTCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTC > 1:210020/1‑90 CCTGATACTCAAGCTCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATG < 2:558222/90‑1 CTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACC > 1:239545/1‑90 CACCGTGGATTCAAGAACATGAATTAATATCTCTCTTAATACTGAGAGTGGATCGCCAGGGAATTTTGCCTGATACTCAAGCTCTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP009273/481519‑481433‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACC < NZ_CP009273/571241‑571156 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |