| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 269666 = | NA (NA) | 17 (0.810) | 9/166 | 0.7 | 100% | intergenic (+2/+146) | ykfC/BW25113_RS01325 | reverse transcriptase domain‑containing protein/IS5‑like element IS5 family transposase |
| ? | NZ_CP009273 | = 481436 | 0 (0.000) | coding (220/648 nt) | acrR | multidrug efflux transporter transcriptional repressor AcrR | |||||
CGCGCGGTGCAATCTACTGGCATTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGAGAGATATTAATTCATGTTCTTGAATCCACGGTGACAGA > NZ_CP009273/481347‑481524 | ggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTag > 1:239545‑M1/87‑90 (MQ=255) gcgGTGCAATCTACTGGCATTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGgga > 2:35424‑M2/1‑87 (MQ=255) cgGTGCAATCTACTGGCATTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGggaa > 1:586192‑M2/1‑86 (MQ=255) catgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGAGCTTGAGTATCAgg < 2:558222‑M1/19‑1 (MQ=255) cTGGCATTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGggaaggtgcgaataag < 2:569480‑M2/90‑17 (MQ=255) cTGGCATTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGggaaggtgcgaataag < 1:51144‑M2/90‑17 (MQ=255) cTGGCATTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGggaaggtgcgaataag < 1:497369‑M2/90‑17 (MQ=255) gaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGAGCTTGAGTATCAGGCAAAAt > 1:210020‑M1/66‑90 (MQ=255) aTTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGggaaggtgcgaataagcgggg < 1:581445‑M2/90‑22 (MQ=255) tttAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGggaaggtgcgaataagcggggaa < 1:554028‑M2/90‑24 (MQ=255) accctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGAGCTTGAGTATCAGGCAAAATTc < 1:213237‑M1/27‑1 (MQ=255) tAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGggaaggtgcgaataagcggggaaat > 2:351271‑M2/1‑65 (MQ=255) tctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCg > 1:219249‑M1/57‑90 (MQ=255) atggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATc > 2:5170‑M1/54‑90 (MQ=255) gctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCAc < 1:489970‑M1/40‑1 (MQ=255) tccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCActc < 2:234295‑M1/42‑1 (MQ=255) tccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCActc < 2:48427‑M1/42‑1 (MQ=255) tccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCActc < 2:500970‑M1/42‑1 (MQ=255) cagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACtctc > 2:489970‑M1/47‑90 (MQ=255) cagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACtctc > 2:392858‑M1/47‑90 (MQ=255) agatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCa > 2:490335‑M1/46‑90 (MQ=255) agatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCa > 2:81735‑M1/46‑90 (MQ=255) agatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCa > 2:530729‑M1/46‑90 (MQ=255) agatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCa > 2:520511‑M1/46‑90 (MQ=255) agatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCa > 2:155420‑M1/46‑90 (MQ=255) agatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCa > 1:234295‑M1/46‑90 (MQ=255) agatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGAGCTTGAGTATCAGGCAAAATACCCTGGCGATCCACTCTCa > 1:194046‑M1/46‑90 (MQ=255) acaaacatgatctcatatcagggacttgttcgcaccttccCTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCAGTAtt < 1:123198‑M1/50‑1 (MQ=255) caaacatgatctcatatcagggacttgttcgcaccttccCTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCAGTATTa < 2:47640‑M1/51‑1 (MQ=255) catgatctcatatcagggacttgttcgcaccttccCTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCAGTATTAagag > 1:558222‑M1/36‑90 (MQ=255) atgatctcatatcagggacttgttcgcaccttccCTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCAGTATTAagaga > 2:535382‑M1/35‑90 (MQ=255) gatctcatatcagggacttgttcgcaccttccCTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCAGTATTAAgagaga < 2:141474‑M1/58‑1 (MQ=255) atcagggacttgttcgcaccttccCTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGAGAGATATTAAtt > 1:500970‑M1/25‑90 (MQ=255) tGTCAGAATCCAATATTGGTGAACTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtt < 2:11774‑M2/90‑64 (MQ=255) gTCAGAATCCAATATTGGTGAACTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtc > 2:531770‑M2/1‑26 (MQ=255) gTCAGAATCCAATATTGGTGAACTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtc < 1:531770‑M2/71‑46 (MQ=255) agggacttgttcgcaccttccCTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCa < 1:454962‑M1/45‑1 (MQ=255) agggacttgttcgcaccttccCTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCa > 2:454962‑M1/22‑66 (MQ=255) gggacttgttcgcaccttccCTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGAGAGATATTAATTCATg > 2:51892‑M1/21‑90 (MQ=255) accttccCTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGAGAGATATTAATTCATGTTCTTGAATCCAc > 2:125533‑M1/8‑90 (MQ=255) ttccCTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCAGTATTa < 2:143600‑M1/51‑1 (MQ=255) ttccCTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCAGTATTa > 1:143600‑M1/5‑55 (MQ=255) tccCTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGAGAGATATTAATTCATGTTCTTGAATCCACGGTg > 2:123198‑M1/4‑90 (MQ=255) tAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaa < 1:13718‑M2/90‑88 (MQ=255) aGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat > 2:460472‑M2/1‑2 (MQ=255) aGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat < 2:316240‑M2/90‑89 (MQ=255) aGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat > 1:545356‑M2/1‑2 (MQ=255) aGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat > 1:321564‑M2/1‑2 (MQ=255) aGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat > 1:156178‑M2/1‑2 (MQ=255) | CGCGCGGTGCAATCTACTGGCATTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGAGAGATATTAATTCATGTTCTTGAATCCACGGTGACAGA > NZ_CP009273/481347‑481524 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |