Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NZ_CP009273 | 612,020 | 0 | A | T | 58.3% | 2.5 / 10.1 | 12 | Y803F (TAT→TTT) | entF | enterobactin non‑ribosomal peptide synthetase EntF |
Reads supporting (aligned to +/- strand): ref base A (0/5); new base T (7/0); total (7/5) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.26e-03 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.93e-03 | |||||||||||
Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
TATGGAATACGGGTCTGCGTATTCTTGATGCGATGATGCATCCGGTGCCGCCGGGTGTGGCGGGTGATCTCTATCTCACTGGCATTCAACTGGCGCAGGGCTATCTCGGACGCCCCGATCTGACCGCCAGCCGCTTTATTGCCGAT > NZ_CP009273/611948‑612093 | tATGGAATACGGGTCTGCGTATTCTTGATGCGATGATGCATCCGGTGCCGCCGGGTGTGGCGGGGGGTCTCTTTCTTACCGGCATTCaaa > 2:40663/1‑89 (MQ=255) aTACGGGTCTGCGTATTCTTGATGCGATGATGCATCCGGTGCCGCCGGGTGTGGCGGGTGATCTCTATCTCACTGGCATTCAACTGgcgc < 1:439106/90‑1 (MQ=255) aCGGGTCTGCGTATTCTTGATGCGATGATGCATCCGGTGCCGCCGGGTGTGGCGGGGGGGCTCTTTCTCCCTGGCATTCAAATGgcgccg > 2:394955/1‑88 (MQ=255) ggTCTGCGTATTCTTGATGCGATGATGCATCCGGTGCCGCCGGGTGTGGCGGGGGGTCTCTTTCTCCCTGGCATTCAACTGGGGCCgggg > 2:170291/1‑89 (MQ=255) cTGCGTATTCTTGATGCGATGATGCATCCGGTGCCGCCGGGTGTGGCGGGGGGTCTCTTTTTCACTGGCATTTAACTGGCGCAgggggat > 2:225036/1‑86 (MQ=255) cTGCGTATTCTTGATGCGATGATGCATCCGGTGCCGCCGGGTGTGGCGGGGGGTCTCTTTCTCACTGGCATTCAACTGGCGCAgggggat > 2:113137/1‑86 (MQ=255) cTGCGTATTCTTGATGCGATGATGCATCCGGTGCCGCCGGGTGTGGCGGGGGATCTCTTTCTCACTGGCATTCAACTGGCGCAgggggat > 2:192074/1‑86 (MQ=255) gATGCGATGATGCATCCGGTGCCGCCGGGTGTGGCGGGGGGTCTCTTTTTCACTGGCATTTAACTGGCGCCGGGCTATCTCGGGCGcccc > 2:160477/1‑90 (MQ=255) gatgCATCCGGTGCCGCCGGGTGTGGCGGGTGATCTCTATCTCACTGGCATTCAACTGGCGCAGGGCTATCTCGGACGCCCCGATCTGAc < 1:394955/90‑1 (MQ=255) cGGTGCCGCCGGGTGTGGCGGGTGATCTCTATCTCACTGGCATTCAACTGGCGCAGGGCTATCTCGGACGCCCCGATCTGACCGCCAGcc < 1:192074/90‑1 (MQ=255) gtgGCGGGTGATCTCTATCTCACTGGCATTCAACTGGCGCAGGGCTATCTCGGACGCCCCGATCTGACCGCCAGCCGCTTTATTGCCGAt < 2:275148/90‑1 (MQ=255) gtgGCGGGTGATCTCTATCTCACTGGCATTCAACTGGCGCAGGGCTATCTCGGACGCCCCGATCTGACCGCCAGCCGCTTTATTGCCGAt < 2:533631/90‑1 (MQ=255) | TATGGAATACGGGTCTGCGTATTCTTGATGCGATGATGCATCCGGTGCCGCCGGGTGTGGCGGGTGATCTCTATCTCACTGGCATTCAACTGGCGCAGGGCTATCTCGGACGCCCCGATCTGACCGCCAGCCGCTTTATTGCCGAT > NZ_CP009273/611948‑612093 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |