| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 2282398 = | NA (NA) | 42 (1.250) | 20/164 | 0.4 | 100% | pseudogene (3/2532 nt) | yejO | autotransporter YejO |
| ? | NZ_CP009273 | = 3629487 | 0 (0.000) | intergenic (+234/+81) | yhiM/yhiN | DUF2776 domain‑containing protein/NAD(P)/FAD‑dependent oxidoreductase | |||||
CATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP009273/2282486‑2282398‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTAATGAGCCCGTGAACTGAAACCCTCCATGCTTAATATAAGGTGGATGGAAAGGTGATTGAAAACTCACTCAGTGGCCAGATCTTT < NZ_CP009273/3629487‑3629401 CATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCC < 2:141437/90‑1CATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCC < 1:535736/90‑1 ATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCT > 2:995053/1‑90 ATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCT > 2:766174/1‑90 ATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCT > 1:470452/1‑90 TTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTA > 1:866844/1‑90 TTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTA > 1:694151/1‑90 TTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTA > 1:453896/1‑90 TTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTA > 2:956275/1‑90 GAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCC > 2:724970/1‑90 AAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGT < 2:895108/90‑1 TCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTG < 2:673598/90‑1 GCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAA < 2:383619/90‑1 GCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAA < 2:364981/90‑1 GCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAA < 1:15977/90‑1 GCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAA < 1:766174/90‑1 CTCAAACATGAAGAAATGAACCGACTGAGTCTGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGATCTGAAAC < 1:987784/90‑1 CATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCA < 1:995053/90‑1 CATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCA < 2:308270/90‑1 CATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCA < 2:500142/90‑1 CATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCA < 1:587683/90‑1 CATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCA < 2:79511/90‑1 AAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCATGCT < 1:752827/90‑1 AGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCATGCTT < 1:380564/90‑1 AGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCATGCTT < 1:482497/90‑1 AATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTTCATGCTTAATATAAG < 1:374699/90‑1 GACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCATGCTTAATATAAGGTG < 2:117751/90‑1 GACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCA > 2:573092/1‑74 GACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCA < 1:573092/74‑1 CTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCATGCTTAATATAAGGTGGA > 1:951251/1‑90 GAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCATGCTTAATATAAGGTGGATG < 2:312363/90‑1 GAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCATGCTTAATATAAGGTGGATG > 2:864059/1‑90 GAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCATGCTTAATATAAGGTGGATG > 1:972646/1‑90 GAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCA < 1:927618/70‑1 GAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCA > 2:927618/1‑70 CCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCATGCTTAATATAAGGTGGATGGAAAGGT < 1:168273/90‑1 ATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCATGCTTAATATAAGGTGGATGGAAAGGTGATTGAAAA > 2:357226/1‑90 CGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCATGCTTAATATAAGGTGGATGGAAAGGTGATTGAAAACTCACTC < 1:89216/90‑1 CTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCATGCTTAATATAAGGTGGATGGAAAGGTGATTGAAAACTCACTCAG < 1:357226/90‑1 TCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCATGCTTAATATAAGGTGGATGGAAAGGTGATTGAAAACTCACTCAGTGGCC < 1:419729/90‑1 TCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCATGCTTAATATAAGGTGGATGGAAAGGTGATTGAAAACTCACTCAGTGGCC < 1:725017/90‑1 TCCCTAATGAGCCCGTGAACTGAAACCCTCCATGCTTAATATAAGGTGGATGGAAAGGTGATTGAAAACTCACTCAGTGGCCAGATCTTT > 2:487510/1‑90 CATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP009273/2282486‑2282398‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTAATGAGCCCGTGAACTGAAACCCTCCATGCTTAATATAAGGTGGATGGAAAGGTGATTGAAAACTCACTCAGTGGCCAGATCTTT < NZ_CP009273/3629487‑3629401 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |