New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	360104 =	NA (NA)	43 (1.280)	22/164	0.3	NA	intergenic (‑35/+251)	lacZ/BW25113_RS23320	beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein
	?	NZ_CP009273	= 360286	NA (NA)					intergenic (‑217/+69)	lacZ/BW25113_RS23320	beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein

CGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTCC  >  NZ_CP009273/360018‑360193                                                                                       |                                                                                           cGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAAtt                                                                                         >  2:503605/1‑90 (MQ=255)     tGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTg                                                                                     >  2:110261/1‑90 (MQ=255)     tGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTg                                                                                     >  2:322567/1‑90 (MQ=255)     tGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTg                                                                                     >  2:573105/1‑90 (MQ=255)          gCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGGCAAACATGAGAATTCCGATCCCCAATTCCTGGTAgg                                                                                >  2:563865/1‑89 (MQ=255)               ttACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATg                                                                           <  1:556208/90‑1 (MQ=255)                    aTCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcggg                                                                      <  2:30128/90‑1 (MQ=255)                         gcgcCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGGcc                                                                 >  1:963333/1‑90 (MQ=255)                            ccaccaTCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGc                                                              >  1:670200/1‑90 (MQ=255)                                  tCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCa                                                        <  1:301089/90‑1 (MQ=255)                                  tCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCa                                                        <  2:670200/90‑1 (MQ=255)                                           ggAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGGGGCCTGCccccccccccccccc                                               >  2:595357/1‑87 (MQ=38)                                           ggAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGGGGCCTGCCCCCCCCCCCCCcgg                                               >  1:99349/1‑90 (MQ=38)                                           ggAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCCGGCTGACCCCCAccccccccc                                               >  2:662403/1‑87 (MQ=255)                                               cTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGt                                           <  2:588314/90‑1 (MQ=255)                                               cTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGt                                           <  1:224138/90‑1 (MQ=255)                                               cTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGt                                           <  1:132470/90‑1 (MQ=255)                                                         aaGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑Caa                                <  1:178739/90‑1 (MQ=255)                                                         aaGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑Caa                                <  2:88713/90‑1 (MQ=255)                                                                  aaCATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGGCCCGCCCCCCCCCCCCCCCGCCGGTGCTTCT‑CAACCTTCCAAt                       >  2:100162/1‑90 (MQ=18)                                                                        agaATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGGGGCCCGCCCCCCCCCCCCCCCGCCCCTGGTTCGCCAACGTCCAAAcccccc                  >  2:818608/1‑87 (MQ=255)                                                                                  tCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGAtt       <  1:595357/90‑1 (MQ=255)                                                                                  tCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGAtt       <  1:550512/90‑1 (MQ=255)                                                                                   ccccAATTCCTGGCAGTTTATGGCGGGGGGCCTGCCCCCCCCCCCCCCCCCCGGTCCTTCG‑CAACGTTCCAATCCCCCCCCCGCGGCttt      >  2:639744/1‑90 (MQ=9)                                                                                       aaTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTcc  <  1:977630/90‑1 (MQ=35)                                                                                       aaTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTcc  <  1:914277/90‑1 (MQ=35)                                                                                       aaTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTcc  <  1:735207/90‑1 (MQ=35)                                                                                       aaTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTcc  <  1:675114/90‑1 (MQ=35)                                                                                       aaTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTcc  <  1:503605/90‑1 (MQ=35)                                                                                       aaTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTcc  <  1:397666/90‑1 (MQ=35)                                                                                       aaTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTcc  <  1:378193/90‑1 (MQ=35)                                                                                       |                                                                                           CGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCG‑CAACGTTCAAATCCGCTCCCGGCGGATTTGTCC  >  NZ_CP009273/360018‑360193

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.