New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	= 1203261	2 (0.060)	18 (0.670)	16/132	0.4	95.7%	coding (305/630 nt)	BW25113_RS05990	hypothetical protein
	?	NZ_CP009273	= 1205058	0 (0.000)					coding (57/540 nt)	BW25113_RS06005	phage tail protein

GCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTA  >  NZ_CP009273/1204997‑1205138                                                              |                                                                                 gccagccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagag                                                      >  2:10032‑M2/1‑62 (MQ=255)                          aGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgtttt                             <  1:241308‑M2/90‑54 (MQ=255)                              cACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgata                         <  2:801347‑M2/90‑58 (MQ=255)                                       gggACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaac                <  2:712019‑M2/90‑67 (MQ=255)                                            acCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggatt           <  2:969854‑M2/90‑72 (MQ=255)                                            acCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatcc                                  <  1:411616‑M2/67‑49 (MQ=255)                                            acCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatcc                                  >  2:411616‑M2/1‑19 (MQ=255)                                               aaCAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattctt        >  1:712019‑M2/1‑16 (MQ=255)                                               aaCAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattctt        >  2:842157‑M2/1‑16 (MQ=255)                                                  aGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcg     <  1:788804‑M2/90‑78 (MQ=255)                                                  aGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcg     >  2:952592‑M2/1‑13 (MQ=255)                                                     tAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggct  <  1:19991‑M2/90‑81 (MQ=255)                                                       aTGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcac                                            >  1:583186‑M2/1‑8 (MQ=255)                                                       aTGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcac                                            <  2:583186‑M2/46‑39 (MQ=255)                                                            gagccttctcccaaaccaaggttttcgagagccgtt                                                 >  2:364289‑M2/1‑3 (MQ=255)                                                            gagccttctcccaaaccaaggttttcgagagccgtt                                                 <  1:364289‑M2/36‑34 (MQ=255)                                                              gccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatt                              <  1:989591‑M2/53‑53 (MQ=255)                                                              gccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatt                              >  2:989591‑M2/1‑1 (MQ=255)                                                              |                                                                                 GCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTA  >  NZ_CP009273/1204997‑1205138

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.