Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	3629488	3631696	2209	43 [0]	[2] 4	yhiN–[pitA]	yhiN,[pitA]

CATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAAATAATCACAAGATAACCACTATCAAAATTAGCTCATTTTTAATGCGACTCTAATAATTTTCATCTTTAGGAAATAGGTCAGGACGA  >  NZ_CP009273/3629398‑3629576                                                                                          |                                                                                          cATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAg                                                                                           >  2:694151/1‑90 (MQ=255)    aaaGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGgga                                                                                        >  2:487510‑M2/1‑87 (MQ=255)            ggCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGggaaggtgcga                                                                                <  1:419729‑M2/90‑12 (MQ=255)            ggCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGggaaggtgcga                                                                                <  1:725017‑M2/90‑12 (MQ=255)                 cTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGggaaggtgcgaataag                                                                           <  1:357226‑M2/90‑17 (MQ=255)                   gagtgagtTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGggaaggtgcgaataagcg                                                                         <  1:89216‑M2/90‑19 (MQ=255)                          ttttCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGggaaggtgcgaataagcggggaaat                                                                  >  2:357226‑M2/1‑65 (MQ=255)                                   aCCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGggaaggtgcgaataagcggggaaattcttctcgg                                                         <  1:168273‑M2/90‑35 (MQ=255)                                          catccaCCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGggaaggtgcgaataagcggggaaattcttctcggctgactc                                                  <  2:312363‑M2/90‑42 (MQ=255)                                          catccaCCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGggaaggtgcgaataagcggggaaattcttctcggctgactc                                                  >  2:864059‑M2/1‑49 (MQ=255)                                          catccaCCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGggaaggtgcgaataagcggggaaattcttctcggctgactc                                                  >  1:972646‑M2/1‑49 (MQ=255)                                            tccaCCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGggaaggtgcgaataagcggggaaattcttctcggctgactcag                                                >  1:951251‑M2/1‑47 (MQ=255)                                              caCCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtc                                              <  2:117751‑M2/90‑46 (MQ=255)                                                 cTTATATTAAGCATGAAGGGTTTCAGTTCACGGGCTCATTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatt                                           <  1:374699‑M2/90‑49 (MQ=255)                                                         aaGCATGGAGGGTTTCAGTTCACGGGCTCATTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttct                                   <  1:380564‑M2/90‑57 (MQ=255)                                                         aaGCATGGAGGGTTTCAGTTCACGGGCTCATTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttct                                   <  1:482497‑M2/90‑57 (MQ=255)                                                          aGCATGGAGGGTTTCAGTTCACGGGCTCATTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttctt                                  <  1:752827‑M2/90‑58 (MQ=255)                                                              tGGAGGGTTTCAGTTCACGGGCTCATTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatg                              <  2:500142‑M2/90‑62 (MQ=255)                                                              tGGAGGGTTTCAGTTCACGGGCTCATTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatg                              <  1:587683‑M2/90‑62 (MQ=255)                                                              tGGAGGGTTTCAGTTCACGGGCTCATTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatg                              <  1:995053‑M2/90‑62 (MQ=255)                                                              tGGAGGGTTTCAGTTCACGGGCTCATTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatg                              <  2:308270‑M2/90‑62 (MQ=255)                                                              tGGAGGGTTTCAGTTCACGGGCTCATTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatg                              <  2:79511‑M2/90‑62 (MQ=255)                                                              tGGAGGGTTTCAGTTCACGGGCTCATTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtc                                              >  2:573092‑M2/1‑29 (MQ=255)                                                              tGGAGGGTTTCAGTTCACGGGCTCATTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtc                                              <  1:573092‑M2/74‑46 (MQ=255)                                                              tGGAGGGTTTCAGTTCACGGGCTCATTAGggaaggtgcgaataagcggggaaattcttctcggctgactc                                                  <  1:927618‑M2/70‑42 (MQ=255)                                                              tGGAGGGTTTCAGTTCACGGGCTCATTAGggaaggtgcgaataagcggggaaattcttctcggctgactc                                                  >  2:927618‑M2/1‑29 (MQ=255)                                                                    gTTTCAGATCACGGGCTCATTAGggaaggtgcgaataagcggggaaattcttctcggcagactcagtcggttcatttcttcatgtttgag                        <  1:987784‑M2/90‑68 (MQ=255)                                                                     tttCAGTTCACGGGCTCATTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagc                       <  2:364981‑M2/90‑69 (MQ=255)                                                                     tttCAGTTCACGGGCTCATTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagc                       <  2:383619‑M2/90‑69 (MQ=255)                                                                     tttCAGTTCACGGGCTCATTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagc                       <  1:15977‑M2/90‑69 (MQ=255)                                                                     tttCAGTTCACGGGCTCATTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagc                       <  1:766174‑M2/90‑69 (MQ=255)                                                                        cAGTTCACGGGCTCATTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccga                    <  2:673598‑M2/90‑72 (MQ=255)                                                                              aCGGGCTCATTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgatttttt              <  2:895108‑M2/90‑78 (MQ=255)                                                                                 ggCTCATTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctc           >  2:724970‑M2/1‑10 (MQ=255)                                                                                        tAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaa    >  1:866844‑M2/1‑3 (MQ=255)                                                                                        tAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaa    >  1:694151‑M2/1‑3 (MQ=255)                                                                                        tAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaa    >  1:453896‑M2/1‑3 (MQ=255)                                                                                        tAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaa    >  2:956275‑M2/1‑3 (MQ=255)                                                                                         aGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat   >  2:766174‑M2/1‑2 (MQ=255)                                                                                         aGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat   >  1:470452‑M2/1‑2 (MQ=255)                                                                                         aGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat   >  2:995053‑M2/1‑2 (MQ=255)                                                                                          gggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatg  <  2:141437‑M2/90‑90 (MQ=255)                                                                                          gggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatg  <  1:535736‑M2/90‑90 (MQ=255)                                                                                          |                                                                                          CATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAAATAATCACAAGATAACCACTATCAAAATTAGCTCATTTTTAATGCGACTCTAATAATTTTCATCTTTAGGAAATAGGTCAGGACGA  >  NZ_CP009273/3629398‑3629576

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑