| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 518,782 | 0 | T | G | 64.7% | 2.0 / 11.1 | 17 | G22G (GGT→GGG) | rhsD | rhs element protein RhsD |
| Reads supporting (aligned to +/- strand): ref base T (4/2); new base G (11/0); total (15/2) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.10e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.17e-02 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
ATAACTAAAAGGGCACTTTATATGAGCGGAAAACCAGCGGCGCGTCAGGGAGATATGACTCAGTATGGCGGTCCCATTGTCCAGGGTTCGGCAGGTGTAAGAATTGGCGCGCCCACCGGCGTGGCGTGCTCGGTGTGTCCGGGCGGGATGACTTCGGGCAACCCGGTAAATC > NZ_CP009273/518696‑518867 | aTAACTAAAAGGGCACTTTATATGAGCGGAAAACCAGCGGCGCGTCAGGGAGATATGACTCAGTATGGCGGTCCCATTGTCCAGGGGTCg > 1:21682/1‑90 (MQ=255)aTAACTAAAAGGGCACTTTATATGAGCGGAAAACCAGCGGCGCGTCAGGGAGATATGACTCAGTATGGCGGGCCCATTGTCCAGGGGTCg > 1:601536/1‑90 (MQ=255) cTAAAAGGGCACTTTATATGAGCGGAAAACCAGCGGCGCGTCAGGGAGATATGACTCAGTATGGCGGTCCCATTGTCCAGGGTTCGGCAg < 2:874030/90‑1 (MQ=255) aaGGGCACTTTATATGAGCGGAAAACCAGCGGCGCGTCAGGGAGATATGACTCAGTATGGCGGTCCCATTTTCCAGGGGTCGGCAGgggt > 1:747561/1‑90 (MQ=38) gggCACTTTATATGAGCGGAAAACCAGCGGCGCGTCAGGGAGATATGACTCAGTATGGCGGTCCCCTTGTCCAGGGGTCGGCAGGGGTaa > 1:349783/1‑90 (MQ=25) gCACTTTATATGAGCGGAAAACCAGCGGCGCGTCAGGGAGATATGACTCAGTATGGCGGTCCCATTGTCCAGGGTTCGGCAGGGGGAAGa > 1:792937/1‑90 (MQ=255) gCACTTTATATGAGCGGAAAACCAGCGGCGCGTCAGGGAGATATGACTCAGTATGGCGGTCCCATTGTCCAGGGGTCGGCAGGGGTAAGa > 1:932512/1‑90 (MQ=255) tGAGCGGAAAACCAGCGGCGCGTCAGGGAGATATGACTCAGTATGGCGGTCCCCCTGTCCCGGGGTCGGCAGGGGGAAGAATTGgggcgc > 2:724374/1‑90 (MQ=21) gCGGAAAACCAGCGGCGCGTCAGGGAGATATGACTCAGTATGGCGGTCCCATTTTCCCGGGGTCGGGAGGGGGAAGAATTGGGGCGcccc > 2:850935/1‑89 (MQ=21) gCGGAAAACCAGCGGCGCGTCAGGGAGATATGACTCAGTATGGCGGTCCCATTGTCCAGGGGTCGGCAGGGGGAAGAATTGGGGCGcccc > 1:427674/1‑89 (MQ=25) gCGGAAAACCAGCGGCGCGTCAGGGAGATATGACTCAGTATGGCGGTCCCAATTTCCCGGGGTCGGGAGGGGGAAGAAATGGCGCGcccc > 2:502001/1‑89 (MQ=21) gCGGAAAACCAGCGGCGCGTCAGGGAGATATGACTCAGTATGGCGGGGCCCCTGGCCAGGGGTCGGCAGGGGGGAGGAATGgcgcgcgcc > 2:474722/1‑87 (MQ=16) gcgTCAGGGAGATATGACTCAGTATGGCGGTCCCATTGTCCAGGGTTCGGCAGGTGTAAGAATTGGCGCGCCCACCGGCGTGGCGTGCTc < 2:398662/90‑1 (MQ=255) ggCGGTCCCATTGTCCAGGGGTCGGCAGGGGTAAGAATTGGCGCGCCCACCGGCGTGGCGTGCTCGGGGTGTCCGGGGGGGGTGACTTCg > 1:894045/1‑90 (MQ=25) ccAGGGTTCGGCAGGTGTAAGAATTGGCGCGCCCACCGGCGTGGCGTGCTCGGTGTGGCCGGGGGGGGTGACTTCGGGCAACCCGGGaaa > 2:817512/1‑90 (MQ=255) aGGGTTCGGCAGGTGTAAGAATTGGCGCGCCCACCGGCGTGGCGTGCTCGGTGTGTCCGGGCGGGATGACTTCGGGCAACCCGGTAAATc > 1:234038/1‑90 (MQ=255) aGGGTTCGGCAGGTGTAAGAATTGGCGCGCCCACCGGCGTGGCGTGCTCGGTGTGTCCGGGCGGGATGACTTCGGGCAACCCGGGAAATc > 2:867307/1‑90 (MQ=255) | ATAACTAAAAGGGCACTTTATATGAGCGGAAAACCAGCGGCGCGTCAGGGAGATATGACTCAGTATGGCGGTCCCATTGTCCAGGGTTCGGCAGGTGTAAGAATTGGCGCGCCCACCGGCGTGGCGTGCTCGGTGTGTCCGGGCGGGATGACTTCGGGCAACCCGGTAAATC > NZ_CP009273/518696‑518867 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |