| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 50,279 | T→C | F153L (TTT→CTT) | folA → | type 3 dihydrofolate reductase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 50,279 | 0 | T | C | 100.0% | 83.5 / NA | 22 | F153L (TTT→CTT) | folA | type 3 dihydrofolate reductase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (11/11); total (11/11) | |||||||||||
CATTTCCCGGATTACGAGCCGGATGACTGGGAATCGGTATTCAGCGAATTCCACGATGCTGATGCGCAGAACTCTCACAGCTATTGCTTTGAGATTCTGGAGCGGCGGTAATTTTGTATAGAATTTACGGCTAGCGCCGGATGCGACGCCGGTCGCGTCTTATCCGGCCTTCC > NZ_CP009273/50192‑50364 | cATTTCCCGGATTACGAGCCGGATGACTGGGAATCGGTATTCAGCGAATTCCACGATGCTGATGCGCAGAACTCTCACAGCTATTGCctt < 2:339646/90‑1 (MQ=255)cATTTCCCGGATTACGAGCCGGATGACTGGGAATCGGTATTCAGCGAATTCCACGATGCTGATGCGCAGAACTCTCACAGCTATTGCctt < 2:133085/90‑1 (MQ=255) tttCCCGGATTAAGAGCCGGATGACTGGGAATCGGTATTCAGCGAATTCCCCGATGCTGATGCGCACAACTCTCACAGCTATTGCCTTga < 2:932249/90‑1 (MQ=255) ccGGATTACGAGCCGGATGACTGGGAATCGGTATTCAGCGAATTCCACGATGCTGATGCGCAGAACTCTCACAGCTATTGCCTTGAGAtt > 1:140362/1‑90 (MQ=255) ggATTACGAGCCGGATGACTGGGAATCGGTATTCAGCGAATTCCACGATGCTGATGCGCAGAACTCTCACAGCTATTGCCTTGAGATTCt > 1:254540/1‑90 (MQ=255) ggATTACGAGCCGGATGACTGGGAATCGGTATTCAGCGAATTCCACGATGCTGATGCGCAGAACTCTCACAGCTATTGCCTTGAGATTCt > 2:803669/1‑90 (MQ=255) ggATTACGAGCCGGATGACTGGGAATCGGTATTCAGCGAATTCCACGATGCTGATGCGCAGAACTCTCACAGCTATTGCCTTGAGATTCt > 1:404366/1‑90 (MQ=255) cGAGCCGGATGACTGGGAATCGGTATTCAGCGAATTCCACGATGCTGATGCGCAGAACTCTCACAGCTATTGCCTTGAGATTCTGGAgcg > 1:757906/1‑90 (MQ=255) cGGATGACTGGGAATCGGTATTCAGCGAATTCCACGATGCTGATGCGCAGAACTCTCACAGCTATTGCCTTGAGATTCTGGAGCGGCGGt > 2:918312/1‑90 (MQ=255) cTGGGAATCGGTATTCAGCGAATTCCACGATGCTGATGCGCAGAACTCTCACAGCTATTGCCTTGAGATTCTGGAGCGGCGGTAATTTTg < 1:918312/90‑1 (MQ=255) aaTCGGTATTCAGCGAATTCCACGATGCTGATGCGCAGAACTCTCACAGCTATTGCCTTGAGATTCTGGAGCGGCGGTAATTTTGTATAg < 1:807916/90‑1 (MQ=255) ggTATTCAGCGAATTCCACGATGCTGATGCGCAGAACTCTCACAGCTATTGCCTTGAGATTCTGGAGCGGCGGTAATTTTGTATAGAAtt > 1:378561/1‑90 (MQ=255) aTTCAGCGAATTCCACGATGCTGATGCGCAGAACTCTCACAGCTATTGCCTTGAGATTCTGGAGCGGCGGTAATTTTTTATAGAATTTAc > 1:313511/1‑90 (MQ=255) gCGAATTCCACGATGCTGATGCGCAGAACTCTCACAGCTATTGCCTTGAGATTCTGGAGCGGCGGTaa > 1:844867/1‑68 (MQ=255) gCGAATTCCACGATGCTGATGCGCAGAACTCTCACAGCTATTGCCTTGAGATTCTGGAGCGGCGGTaa < 2:844867/68‑1 (MQ=255) aTTCCACGATGCTGATGCGCAGAACTCTCACAGCTATTGCCTTGAGATTCTGGAGCGGCGGTAATTTTGTATAGAATTTACGGCTAgcgc < 2:889193/90‑1 (MQ=255) cgcAGAACTCTCACAGCTATTGCCTTGAGATTCTGGAGCGGCGGTAATTTTGTATAGAATTTACGGCTAGCGCCGGATGCGACGCCGGTc < 2:930277/90‑1 (MQ=255) cgcAGAACTCTCACAGCTATTGCCTTGAGATTCTGGAGCGGCGGTAATTTTGTATAGAATTTACGGCTAGCGCCGGATGCGACGCCGGTc < 1:536341/90‑1 (MQ=255) gcAGAACTCTCACAGCTATTGCCTTGAGATTCTGGAGCGGCGGTAATTTTTTATAGAATTTTCGGCTAACGCCGGGTGCGGCGCCGGGcg > 2:45641/1‑90 (MQ=255) gcAGAACTCTCACAGCTATTGCCTTGAGATTCTGGAGCGGCGGTAATTTTGTATAGAATTTTCGGCTAACGCCGGGTTCGGCGCCCGTcg > 1:746513/1‑90 (MQ=255) cacaGCTATTGCCTTGAGATTCTGGAGCGGCGGTAATTTTGTATAGAATTTACGGCTAGCGCCGGATGCGACGCCGGTCGCGTCTTATcc < 2:772784/90‑1 (MQ=255) gCTATTGCCTTGAGATTCTGGAGCGGCGGTAATTTTGTATAGAATTTACGGCTAGCGCCGGATGCGACGCCGGTCGCGTCTTATCCGGcc < 1:989920/90‑1 (MQ=255) gCTATTGCCTTGAGATTCTGGAGCGGCGGTAATTTTGTATAGAATTTACGGCTAGCGCCGGATGCGACGCCGGTCGCGTCTTATCCGGcc < 1:45641/90‑1 (MQ=255) ttGCCTTGAGATTCTGGAGCGGCGGTAATTTTGTATAGAATTTACGGCTAGCGCCGGATGCGACGCCGGTCGCGTCTTATCCGGCCTTcc < 1:803669/90‑1 (MQ=255) | CATTTCCCGGATTACGAGCCGGATGACTGGGAATCGGTATTCAGCGAATTCCACGATGCTGATGCGCAGAACTCTCACAGCTATTGCTTTGAGATTCTGGAGCGGCGGTAATTTTGTATAGAATTTACGGCTAGCGCCGGATGCGACGCCGGTCGCGTCTTATCCGGCCTTCC > NZ_CP009273/50192‑50364 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |