| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 481433 = | 0 (0.000) | 26 (1.270) | 19/166 | 0.1 | 100% | coding (217/648 nt) | acrR | multidrug efflux transporter transcriptional repressor AcrR |
| ? | NZ_CP009273 | = 571241 | NA (NA) | coding (1041/1068 nt) | BW25113_RS02855 | porin | |||||
CGTGGATTCAAGAACATGAATTAATATCTCTCTTAATACTGAGAGTGGATCGCCAGGGAATTTTGCCTGATACTCAAGCTCTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP009273/481516‑481433‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTT < NZ_CP009273/571241‑571154 CGTGGATTCAAGAACATGAATTAATATCTCTCTTAATACTGAGAGTGGATCGCCAGGGAATTTTGCCTGATACTCAAGCTCTAGGGAAGG > 2:70377/1‑90 TTAATATCTCTCTTAATACTGAGAGTGGATCGCCAGGGAATTTTGCCTGATACTCAAGCTCTAGGGAAGGTGCGAACAAGTCCCTGATAT < 2:418172/90‑1 TAATACTGAGAGTGGATCGCCAGGGAATTTTGCCTGATACTCAAGCTCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTG > 1:454208/1‑90 TGAGAGTGGATCGCCAGGGAATTTTGCCTGATACTCAAGCTCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCT > 1:178675/1‑90 TGAGAGTGGATCGCCAGGGAATTTTGCCTGATACTCAAGCTCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCT > 1:208134/1‑90 TGAGAGTGGATCGCCAGGGAATTTTGCCTGATACTCAAGCTCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCT > 2:246643/1‑90 TGAGAGTGGATCGCCAGGGAATTTTGCCTGATACTCAAGCTCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCT > 2:234168/1‑90 TGAGAGTGGATCGCCAGGGAATTTTGCCTGATACTCAAGCTCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCT > 1:571983/1‑90 TGAGAGTGGATCGCCAGGGAATTTTGCCTGATACTCAAGCTCTAGGGA < 1:260654/48‑1 TGAGAGTGGATCGCCAGGGAATTTTGCCTGATACTCAAGCTCTAGGGA > 2:260654/1‑48 GAGTGGATCGCCAGGGAATTTTGCCTGATACTCAAGCTCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGA < 1:178776/90‑1 GAGTGGATCGCCAGGGAATTTTGCCTGATACTCAAGCTCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGA < 2:208134/90‑1 GTGGATCGCCAGGGAATTTTGCCTGATACTCAAGCTCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGC < 2:191220/90‑1 GTGGATCGCCAGGGAATTTTGCCTGATACTCAAGCTCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGC > 2:209958/1‑90 GATCGCCAGGGAATTTTGCCTGATACTCAAGCTCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCAT < 2:216715/90‑1 GATCGCCAGGGAATTTTGCCTGATACTCAAGCTCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCAT < 1:548323/90‑1 GATCGCCAGGGAATTTTGCCTGATACTCAAGCTCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCAT > 2:466427/1‑90 AGGGAATTTTGCCTGATACTCAAGCTCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAG < 1:602121/90‑1 GAATTTTGCCTGATACTCAAGCTCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGT < 1:536437/90‑1 CCTGATACTCAAGCTCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATG < 1:269355/90‑1 TACTCAAGCTCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCA < 1:550020/90‑1 CTCAAGCTCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATC < 1:70377/90‑1 AAGCTCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAAC < 1:466427/90‑1 GCTCTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTT > 2:589961/1‑90 CTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACC > 2:287769/1‑90 AGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTT > 1:395776/1‑90 CGTGGATTCAAGAACATGAATTAATATCTCTCTTAATACTGAGAGTGGATCGCCAGGGAATTTTGCCTGATACTCAAGCTCTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP009273/481516‑481433‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTT < NZ_CP009273/571241‑571154 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |