New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	360104 =	NA (NA)	49 (2.390)	28/166	0.0	NA	intergenic (‑35/+251)	lacZ/BW25113_RS23320	beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein
	?	NZ_CP009273	= 360286	NA (NA)					intergenic (‑217/+69)	lacZ/BW25113_RS23320	beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein

ACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGG‑CCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCC  >  NZ_CP009273/360016‑360193                                                                                         |                                                                                           aCCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATGAGCTGTCAAACATGAGAATTCCGATCCCCaa                                                                                           <  1:500588/90‑1 (MQ=255)       tGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTg                                                                                     >  1:330543/1‑90 (MQ=255)          cAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCa                                                                                  <  2:197116/90‑1 (MQ=255)                       tCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcgggg                                                                     >  1:113219/1‑89 (MQ=255)                           gcgcCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTcc                                                                 <  1:7226/90‑1 (MQ=255)                                        gTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTgg                                                                                    <  2:542254/58‑1 (MQ=255)                                        gTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTgg                                                                                    >  1:542254/1‑58 (MQ=255)                                          gCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGGGGCCTGCcccccccccccc                                                  >  2:346493/1‑90 (MQ=38)                                             ggAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGGGGGCGGCCCGCccccccccccg                                               >  1:75085/1‑87 (MQ=255)                                             ggAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGGGGCCCGCCCCCCCCCCCCCcgg                                               >  2:160878/1‑90 (MQ=255)                                                  tCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGGGGCCCGCCCCCCCCCCCCCCGG‑CCGtt                                         >  2:164868/1‑90 (MQ=37)                                                     gatgatAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGGCCTCCCCCCCCCCCCCCCGG‑CCGTTTCt                                      >  2:93045/1‑90 (MQ=37)                                                           aaGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGGGGCCCGCCCCCCCCCCCCCCCG‑CCCCTGCTTCGcca                                >  1:455777/1‑88 (MQ=25)                                                           aaGCTGTCAAACATGAGAATCCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGG‑CCGTTGCTTCGCaa                                <  1:164868/90‑1 (MQ=255)                                                                          agaATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGG‑CCGTTGCTTCGCAACGTTCAAATCCGCTc                 <  1:268439/90‑1 (MQ=255)                                                                               tCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGG‑CCGTTGCTTCGCAACGTTCAAATCCGCTCCcggc            <  2:438578/90‑1 (MQ=255)                                                                                      attaaTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCCCCCCCCCCCCGG‑CCGGTGCTTTGCAAAGTTTAAAACCCCTCCCCGCGGGtttt     >  2:230676/4‑89 (MQ=2)                                                                                      attaaTTCCTGGCAGTTTATGGCGGGCGGCCTCCCCGCCCCCCCCCGGGCCCGTTG‑TTTGCGAAATTCAAAACCGCCCCCCGCCGttttt     >  2:284536/4‑89 (MQ=2)                                                                                         aaTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCCCCCTCCGGG‑CCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc  <  1:79877/90‑1 (MQ=25)                                                                                         aaTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGG‑CCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc  <  2:35311/90‑1 (MQ=35)                                                                                         aaTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGG‑CCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc  <  1:224977/90‑1 (MQ=35)                                                                                         aaTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGG‑CCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc  <  2:79368/90‑1 (MQ=35)                                                                                         aaTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGG‑CCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc  <  2:87963/90‑1 (MQ=35)                                                                                         aaTTCCTGGCAGTTTATGGCGGGCGGCCTGCCCCCCCCCCCCCCGG‑CCGTTGCTTCGCAACGTTCAAATCCCCTCCCGGCGGGTTTTTcc  >  2:89359/1‑90 (MQ=11)                                                                                         |                                                                                           ACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGG‑CCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCC  >  NZ_CP009273/360016‑360193

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.