| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 269666 = | NA (NA) | 19 (0.930) | 8/166 | 0.8 | 100% | intergenic (+2/+146) | ykfC/BW25113_RS01325 | reverse transcriptase domain‑containing protein/IS5‑like element IS5 family transposase |
| ? | NZ_CP009273 | = 481436 | 0 (0.000) | coding (220/648 nt) | acrR | multidrug efflux transporter transcriptional repressor AcrR | |||||
CGCGCGGTGCAATCTACTGGCATTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGAGAGATATTAATTCATGTTCTTGAATCCACGGTGACAGAA > NZ_CP009273/481347‑481525 | ggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTag > 2:287769‑M1/87‑90 (MQ=255) gcgGTGCAATCTACTGGCATTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAAACCAATATTGGTGAACTAGgga > 1:352096‑M2/1‑87 (MQ=255) aagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGAGc > 2:589961‑M1/84‑90 (MQ=255) gttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGAGCtt < 1:466427‑M1/9‑1 (MQ=255) gatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGAGCTTGAg < 1:70377‑M1/12‑1 (MQ=255) tgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGAGCTTGAGTa < 1:550020‑M1/14‑1 (MQ=255) catgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGAGCTTGAGTATCAgg < 1:269355‑M1/19‑1 (MQ=255) cTGGCATTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGggaaggtgcgaataag < 2:511268‑M2/90‑17 (MQ=255) cTGGCATTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGggaaggtgcgaataag < 1:60126‑M2/90‑17 (MQ=255) cTGGCATTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGggaa > 2:381908‑M2/1‑74 (MQ=255) cTGGCATTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGggaa < 1:381908‑M2/78‑5 (MQ=255) accctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGAGCTTGAGTATCAGGCAAAATTc < 1:536437‑M1/27‑1 (MQ=255) ctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGAGCTTGAGTATCAGGCAAAATTCCCt < 1:602121‑M1/30‑1 (MQ=255) atggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATc > 2:466427‑M1/54‑90 (MQ=255) atggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATc < 1:548323‑M1/37‑1 (MQ=255) atggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATc < 2:216715‑M1/37‑1 (MQ=255) gctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCAc > 2:209958‑M1/51‑90 (MQ=255) gctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCAc < 2:191220‑M1/40‑1 (MQ=255) tccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCActc < 2:208134‑M1/42‑1 (MQ=255) tccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCActc < 1:178776‑M1/42‑1 (MQ=255) agatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCa > 2:234168‑M1/46‑90 (MQ=255) agatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCa > 2:246643‑M1/46‑90 (MQ=255) agatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCa > 1:571983‑M1/46‑90 (MQ=255) agatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCa > 1:208134‑M1/46‑90 (MQ=255) agatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCa > 1:178675‑M1/46‑90 (MQ=255) tGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGggaaggtgcgaataagcggggaaattcttctcggctgactca > 2:336820‑M2/1‑48 (MQ=255) caaacatgatctcatatcagggacttgttcgcaccttccCTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCAGTATTa > 1:454208‑M1/40‑90 (MQ=255) atatcagggacttgttcgcaccttccCTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGAGAGATATTaa < 2:418172‑M1/64‑1 (MQ=255) cTGTCAGAATCCAATATTGGTGAACTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgt < 1:382821‑M2/90‑63 (MQ=255) gTCAGAATCCAATATTGGTGAACTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgttt < 1:352255‑M2/90‑65 (MQ=255) ggTGAACTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctc < 2:320099‑M2/90‑81 (MQ=255) ccttccCTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGAGAGATATTAATTCATGTTCTTGAATCCACg > 2:70377‑M1/7‑90 (MQ=255) tccCTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCa < 1:260654‑M1/45‑1 (MQ=255) tccCTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCa > 2:260654‑M1/4‑48 (MQ=255) aCTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgta < 1:127874‑M2/90‑86 (MQ=255) tAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaa > 2:119480‑M2/1‑3 (MQ=255) tAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaa > 1:81659‑M2/1‑3 (MQ=255) tAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaa > 1:320099‑M2/1‑3 (MQ=255) aGggaaggtgcgaataagcggggaaattcttctcggctgacttagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat > 1:103264‑M2/1‑2 (MQ=255) aGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat > 2:373392‑M2/1‑2 (MQ=255) aGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat > 2:393620‑M2/1‑2 (MQ=255) gggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatg < 2:234676‑M2/90‑90 (MQ=255) gggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatg < 2:582398‑M2/90‑90 (MQ=255) gggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcctcatgtttgagccgattttttctcccgtaaatg < 2:381486‑M2/90‑90 (MQ=255) | CGCGCGGTGCAATCTACTGGCATTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGAGAGATATTAATTCATGTTCTTGAATCCACGGTGACAGAA > NZ_CP009273/481347‑481525 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |