Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	3576003	3576006	4	4 [0]	[0] 2	hcp	Hcp1 family type VI secretion system effector

AATAAATAGTTACTTAGGCAAACTTAGAGGTCAACAAAAACTTCTTGATGGTATA  >  NZ_CP009273/3575948‑3576002                                                       | aataaataGTTACTTAGGCAAACTTAGAGGTCAACAAAAACTTCTTGATGGtata  <  1:126275/55‑1 (MQ=255) aataaataGTTACTTAGGCAAACTTAGAGGTCAACAAAAACTTCTTGATGGtata  >  2:126275/1‑55 (MQ=255)           tACTTAGGCAAACTTAGAGGTCAACAAAAACTTCTTGATGGtata  <  1:537723/45‑1 (MQ=255)           tACTTAGGCAAACTTAGAGGTCAACAAAAACTTCTTGATGGtata  >  2:537723/1‑45 (MQ=255)                                                       | AATAAATAGTTACTTAGGCAAACTTAGAGGTCAACAAAAACTTCTTGATGGTATA  >  NZ_CP009273/3575948‑3576002

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑