| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 2282398 = | NA (NA) | 47 (1.690) | 22/170 | 0.2 | 100% | pseudogene (3/2532 nt) | yejO | autotransporter YejO |
| ? | NZ_CP009273 | = 3629487 | 0 (0.000) | intergenic (+234/+81) | yhiM/yhiN | DUF2776 domain‑containing protein/NAD(P)/FAD‑dependent oxidoreductase | |||||
CATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP009273/2282486‑2282398‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTAATGAGCCCGTGAACTGAAACCCTCCATGCTTAATATAAGGTGGATGGAAAGGTGATTGAAAACTCACTCAGTGGCCAGA < NZ_CP009273/3629487‑3629406 CATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCC < 1:437124/90‑1CATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTAAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCC < 1:175882/90‑1 ATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCT > 1:329371/1‑90 ATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCT > 1:541727/1‑90 ATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCT > 1:726298/1‑90 ATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCT > 1:191055/1‑90 TTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTA < 2:601420/90‑1 TTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTA > 2:388721/1‑90 TTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTA > 1:152837/1‑90 TTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAA < 2:569622/90‑1 TTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAA > 2:476075/1‑90 CGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGA < 2:499341/90‑1 GAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCC > 1:499188/1‑90 AGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCC > 2:704583/1‑90 GGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAA > 1:194409/1‑90 GGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAA < 2:779318/90‑1 GCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAA < 2:80947/90‑1 GCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAA < 1:610635/90‑1 CTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAAC < 2:528642/90‑1 CATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCga < 1:751626/90‑3 CATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCA < 2:555428/90‑1 CATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCA < 1:509843/90‑1 ATGAAGAAATGAAATGACTGAGCCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCAT < 1:158723/90‑1 AAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCATGCT < 1:548471/90‑1 AAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCATGCT < 1:449560/90‑1 AGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCATGCTT < 2:168354/90‑1 AGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCATGCTT < 2:750675/90‑1 AGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCATGCTT < 1:419106/90‑1 AAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCATGCTTAATATAA < 2:200060/90‑1 GACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCATGCTTAATATAAGGTG < 2:237225/90‑1 GACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCATGCTTAATATAAGGTG < 1:289637/90‑1 GACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCATGCTTAATATAAGGTG < 2:499188/90‑1 GACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCATGCTTAATATAA < 1:79526/86‑1 GACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCATGCTTAATATAA > 2:79526/1‑86 TCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCATGCTTAATATAAGGTGGATGGAA < 1:674090/90‑1 CAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCATGCT < 1:524300/70‑1 CAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCATGCT > 2:524300/1‑70 GCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCATGCT > 1:43716/1‑68 GCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCATGCT < 2:43716/68‑1 CGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCATGCTTAATATAAGGTGGATGGAAAGGTGATTGAAAACTCACTC < 1:306868/90‑1 CGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCATGCTTAATATAAGGTGGATGGAAAGGTGATTGAAAACTCACTC < 1:476075/90‑1 GCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCATGCTTAATATAAGGTGGATGGAAAGGTGATTGAAAACTCACTCA > 2:527108/1‑90 CTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAACCCCTCCATGCTTAATATAAGGTGGATGGAAAGGTGATTGAAAACTCACTCAG < 1:18754/90‑1 CTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCATGCTTAATATAAGGTGGATGGAAAGGTGATTGAAAACTCACTCAG < 1:181005/90‑1 CTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCATGCTTAATATAAGGTGGATGGAAAGGTGATTGAAAACTCACTCAG < 2:371155/90‑1 TCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCATGCTTAATATAAGGTGGATGGAAAGGTGATTGAAAACTCACTCAGTGGCC < 1:599035/90‑1 CACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCATGCTTAATATAAGGTGGATGGAAAGGTGATTGAAAACTCACTCAGTGGCCAGA < 2:572340/90‑1 CATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP009273/2282486‑2282398‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTAATGAGCCCGTGAACTGAAACCCTCCATGCTTAATATAAGGTGGATGGAAAGGTGATTGAAAACTCACTCAGTGGCCAGA < NZ_CP009273/3629487‑3629406 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |