| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 2283591 | NA (NA) | 58 (2.110) | 32/168 | 0.0 | 93.6% | intergenic (‑67/‑388) | BW25113_RS11435/narP | IS5‑like element IS5 family transposase/nitrate/nitrite response regulator protein NarP |
| ? | NZ_CP009273 | = 3512441 | 4 (0.140) | intergenic (‑18/+383) | aroK/hofQ | shikimate kinase AroK/DNA uptake porin HofQ | |||||
CGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP009273/2283503‑2283591‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAATATCTTTCTGGTTGGGCCTATGGGTGCCGGAAAAAGCACTATTGGGCGCCAGT < NZ_CP009273/3512441‑3512354 CGAAGGTAAGTTGATGACTCATGATGATCCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCC < 1:494254/90‑1 GAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 2:595632/1‑90 GAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:627909/1‑90 GAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT < 2:293874/90‑1 GAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT < 2:492611/90‑1 GAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT < 2:340173/90‑1 AAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 2:242497/90‑1 AGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTA > 1:79377/1‑90 AGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTA > 1:695115/1‑90 GTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTAGTA > 1:694645/1‑90 ATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTAGTACCGA > 1:2237/1‑90 TGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTAGTACCGAA > 1:437225/1‑90 TGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTAGTACCGAAAAAATGG < 2:334571/90‑1 ACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTAGTACCGAAAAAATGGCAGAGA > 1:308174/1‑90 CTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTAGTACCGAAAAAATGGCAGAGAAAC > 1:87691/1‑90 TGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTAGTACCGAAAAAATGGCAGAGAAACG > 1:123025/1‑90 TGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTAGTACCGAAAAAATGGCAGAGAA < 2:547525/87‑1 TGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTAGTACCGAAAAAATGGCAGAGAA > 1:547525/1‑87 TCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAA < 2:551523/90‑1 TCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAA < 1:121983/90‑1 CTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAAT > 1:709920/1‑90 ATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAATAT > 2:443104/1‑90 ATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAATAT < 2:2237/90‑1 ATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAATAT > 1:151134/1‑90 GCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAATATCTT > 1:670468/1‑90 tgCAGATGACAAACATGATCTCCTATCAGGGACTTGTTAGCACCTTCCTTAGTAGTACCGAAAAAATGGCATAGAAACGCAATATGTTTC > 1:756000/3‑90 TCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAATATCTTTC > 1:84684/1‑90 TCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAATATCTTTC > 1:98964/1‑90 TCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAATATCTTTC < 2:688053/90‑1 TCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 2:594687/1‑49 TCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT < 1:594687/49‑1 TGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAATATCTTTCTGGTTG < 1:592042/90‑1 GATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAATATCTTTCTGGTTGGGCCTATGGG > 2:499619/1‑90 CTCATATCAGGGACTTGTTCGCACCTTCCTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAATATCTTTCTGGTTGGGCCTATGGGTGC < 2:63924/90‑1 CTCATATCAGGGACTTGTTCGCACCTTCCTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAATATCTTTCTGGTTGGGCCTATGGGTGC < 1:45076/90‑1 CATATCAGGGACTTGTTCGCACCTTCCTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAATATCTTTCTGGTTGGGCCTATGGGTGCCG < 1:491510/90‑1 ATATCAGGGACTTGTTCGCACCTTCCTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAATATCTTTCTGGTTGGGCCTATGGGTGCCGG > 2:408486/1‑90 TATCAGGGACTTGTTCGCACCTTCCTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAATATCTTTCTGGTTGGGCCTATGGGTGCCGGA > 1:88963/1‑90 TATCAGGGACTTGTTCGCACCTTCCTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAATATCTTTCTGGTTGGGCCTATGGGTGCCGGA > 1:590915/1‑90 CAGGGACTTGTTCGCACCTTCCTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAATATCTTTCTGGTTGGGCCTATGGGTGCCGGAAAA > 1:788248/1‑90 tGGGACTTGTTCTCACCTTCCTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAATATCTTTCTGGTT > 2:295972/2‑68 tGGGACTTGTTCTCACCTTCCTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAATATCTTTCTGGTT < 1:295972/67‑1 AGGGACTTGTTCGCACCTTCCTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAATATCTTTCTGGTT > 1:524830/1‑68 AGGGACTTGTTCGCACCTTCCTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAATATCTTTCTGGTT < 2:524830/68‑1 GGGACTTGTTCGCACCTTCCTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAATATCTTTCTGGTTGGGCCTATGGGTGCCGGAAAAAG > 2:532917/1‑90 GGGACTTGTTCGCACCTTCCTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAATATCTTTCTGGTTGGGCCTATGGGTGCCGGAAAAAG > 1:412195/1‑90 ACTTGTTCGCACCTTCCTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAATATCTTTCTGGTTGGGCCTATGGGTGCCGGAAAAAGCAC > 2:700505/1‑90 ACTTGTTCGCACCTTCCTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAATATCTTTCTGGTTGGGCCTATGGGTGCCGGAAAAAGCAC > 1:370102/1‑90 GTTCGCACCTTCCTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAATATCTTTCTGGTT > 2:158269/1‑60 GTTCGCACCTTCCTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAATATCTTTCTGGTT < 1:158269/60‑1 GTTCGCACCTTCCTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAATATCCTTCTGGTTGGGCCTATGGGTGCCGGAAAAAGCACTATT > 2:255426/1‑90 TTCGCACCTTCCTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAATATCTTTCTGGTTGGGCCTATGGGTGCCGGAAAAAGCACTATTG < 1:4315/90‑1 TCGCACCTTCCTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAATATCTTTCTGGTTGGGCCTATGGGTGCCGGAAAAAGCACTATTGG > 1:646054/1‑90 ACCTTCCTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAATATCTTTCTGGTTGGGCCTATGGGTGCCGGAAAAAGCACTATTGGGCGC < 2:87691/90‑1 TTCCTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAATATCTTTCTGGTTGGGCCTATGGGTGCCGGAAAAAGCACTATTGGGCGCCAG > 2:531084/1‑90 TTCCTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAATATCTTTCTGGTTGGGCCTATGGGTGCCGGAAAAAGCACTATTGGGCGCCAG > 1:523335/1‑90 TCCTTAGTAGTACCGAAAAAATGGCAGATAAACGCAATATCTTTCTGGTTGGGCCTATGGGTGCCGGAAAAAGCACTATTGGGCGCCAGT > 2:322887/1‑90 TCCTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAATATCTTTCTGGTTGGGCCTATGGGTGCCGGAAAAAGCACTATTGGGCGCCAGT > 2:546632/1‑90 TCCTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAATATCTTTCTGGTTGGGCCTATGGGTGCCGGAAAAAGCACTATTGGGCGCCAGT > 2:711299/1‑90 CGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP009273/2283503‑2283591‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAATATCTTTCTGGTTGGGCCTATGGGTGCCGGAAAAAGCACTATTGGGCGCCAGT < NZ_CP009273/3512441‑3512354 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |