| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 4353280 | 48 (1.720) | 3 (0.120) | 3/158 | 2.2 | 6.9% | coding (1580/1698 nt) | dsbD | protein‑disulfide reductase DsbD |
| ? | NZ_CP009273 | = 4353321 | 36 (1.390) | coding (1539/1698 nt) | dsbD | protein‑disulfide reductase DsbD | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GAAGGTTTCAGCATCCATAAAGCCCGTGACGCGTGCTTGTGGATGCTCCTGGCCTTGTCCGTCAAAAAAGAGAATTGTCGGTAGGCCAAGGACATTAAGATGCTTTAACAGCGCCACATCTTGTGCGTCGTTGGCCGTGACGTTGGCCTGAAGTAAGACCGTGTCTGCTAACGC > NZ_CP009273/4353192‑4353365 | gAAGGTTTCAGCATCCATAAAGCCCGTGACGCGTGCTTGTGGATGCTCCTGGCCTTGTCCGTCAAAAAAGAGAATTGTCGGTAGGCCAAg < 2:458282/90‑1 (MQ=255)gAAGGTTTCAGCATCCATAAAGCCCGTGACGCGTGCTTGTGGATGCTCCTGGCCTTGTCCGTCAAAAAAGAGAATTGTCGGTAGGCCAAg < 1:704942/90‑1 (MQ=255) ggTTTCAGCATCCATAAAGCCCGTGACGCGTGCTTGTGGATGCTCCTGGCCTTGTCCGTCAAAAAAGAGAATTGTCGGTAGGCCAAcgac < 1:352719‑M1/90‑5 (MQ=255) tttCAGCATCCATAAAGCCCGTGACGCGTGCTTGTGGATGCTCCTGGCCTTGTCCGTCAAAAAAGAGAATTGTCGGTAGGCCAAGGACAt > 2:327427/1‑90 (MQ=255) aGCATCCATAAAGCCCGTGACGCGTGCTTGTGGATGCTCCTGGCCTTGTCCGTCAAAAAAGAGAATTGTCGGTAGGCCAAGGACATTAAg < 2:657978/90‑1 (MQ=255) aGCATCCATAAAGCCCGTGACGCGTGCTTGTGGATGCTCCTGGCCTTGTCCGTCAAAAAAGAGAATTGTCGGTAGGCCAAGGACATTAAg < 1:450843/90‑1 (MQ=255) aGCATCCATAAAGCCCGTGACGCGTGCTTGTGGATGCTCCTGGCCTTGTCCGTCAAAAAAGAGAATTGTCGGTAGGCCAAGGACATTAAg < 2:409281/90‑1 (MQ=255) aGCATCCATAAAGCCCGTGACGCGTGCTTGTGGATGCTCCTGGCCTTGTCCGTCAAAAAAGAGAATTGTCGGTAGGCCAAGGACATTAAg < 1:35129/90‑1 (MQ=255) gCATCCATAAAGCCCGTGACGCGTGCTTGTGGATGCTCCTGGCCTTGTCCGTCAAAAAAGAGAATTGTCGGTAGGCCAAGGACATTAAGa < 1:363234/90‑1 (MQ=255) aTCCATAAAGCCCGTGACGCGTGCTTGTGGATGCTCCTGGCCTTGTCCGTCAAAAAAGAGAATTGTCGGTAGGCCAAGGACATTAAGATg > 2:300687/1‑90 (MQ=255) tCCATAAAGCCCGTGACGCGTGCTTGTGGATGCTCCTGGCCTTGTCCGTCAAAAAAGAGAATTGTCGGTAGGCCAAGGACATTAAGATGc > 1:133871/1‑90 (MQ=255) gCCCGTGACGCGTGCTTGTGGATGCTCCTGGCCTTGTCCGTCAAAAAAGAGAATTGTCGGTAGGCCAAGGACATTAAGATGCTTTAACAg < 1:377864/90‑1 (MQ=255) ccGTGACGCGTGCTTGTGGATGCTCCTGGCCTTGTCCGTCAAAAAAGAGAATTGTCGGTAGGCCAAGGACATTAAGATGCTTTAACAgcg > 2:219826/1‑90 (MQ=255) ccGTGACGCGTGCTTGTGGATGCTCCTGGCCTTGTCCGTCAAAAAAGAGAATTGTCGGTAGGCCAAGGACATTAAGATGCTTTAACAgcg > 1:505498/1‑90 (MQ=255) cGTGACGCGTGCTTGTGGATGCTCCTGGCCTTGTCCGTCAAAAAAGAGAATTGTCGGTAGGCCAAGGACATTAAGATGCTTTAACAgcgc > 1:529327/1‑90 (MQ=255) cGTGACGCGTGCTTGTGGATGCTCCTGGCCTTGTCCGTCAAAAAAGAGAATTGTCGGTAGGCCAAGGACATTAAGATGCTTTAACAgcgc > 1:720750/1‑90 (MQ=255) cGTGACGCGTGCTTGTGGATGCTCCTGGCCTTGTCCGTCAAAAAAGAGAATTGTCGGTAGGCCAAGGACATTAAGATGCTTTAACAgcgc > 1:723878/1‑90 (MQ=255) gTGACGCGTGCTTGTGGATGCTCCTGGCCTTGTCCGTCAAAAAAGAGAATTGTCGGTAGGCCAAGGACATTAAGATGCTTTAACAGCGcc > 2:186001/1‑90 (MQ=255) gTGACGCGTGCTTGTGGATGCTCCTGGCCTTGTCCGTCAAAAAAGAGAATTGTCGGTAGGCCAAGGACATTAAGATGCTTTAACAGCGcc > 2:648327/1‑90 (MQ=255) gTGACGCGTGCTTGTGGATGCTCCTGGCCTTGTCCGTCAAAAAAGAGAATTGTCGGTAGGCCAAGGACATTAAGATGCTTTAACAGCGcc > 2:384861/1‑90 (MQ=255) aCGCGTGCTTGTGGATGCTCCTGGCCTTGTCCGTCAAAAAAGAGAATTGTCGGTAGGCCAAGGACATTAAGATGCTTTAACAGCGCcaca < 1:224227/90‑1 (MQ=255) gcgTGCTTGTGGATGCTCCTGGCCTTGTCCGTCAAAAAAGAGAATTGTCGGTAGGCCAAGGACATTAAGATGCTTTAACAGCGCCACATc > 2:467196/1‑90 (MQ=255) cgTGCTTGTGGATGCTCCTGGCCTTGTCCGTCAAAAAAGAGAATTGTCGGTAGGCCAAGGACATTAAGATGCTTTAACAGCGCCACATCt > 1:285886/1‑90 (MQ=255) ggATGCTCCTGGCCTTGTCCGTCAAAAAAGAGAATTGTCGGTAGGCCAAGGACATTAAGATGCTTTAACAGCGCCACATCTTGTGcgtcg > 2:493220/1‑90 (MQ=255) cTCCTGGCCTTGTCCGTCAAAAAAGAGAATTGTCGGTAGGCCAAGGACATTAAg > 2:143200/1‑54 (MQ=255) cTCCTGGCCTTGTCCGTCAAAAAAGAGAATTGTCGGTAGGCCAAGGACATTAAg < 1:143200/54‑1 (MQ=255) cTCCTGGCCTTGTCCGTCAAAAAAGAGAATTGTCGGTAGGCCAAGGACATTAAGATGCTTTAACAGCGCCACATCTTGTGCGTCGttggc < 1:360562‑M2/90‑6 (MQ=255) cTCCTGGCCTTGTCCGTCAAAAAAGAGAATTGTCGGTAGGCCAAGGACATTAAGATGCTTTAACAGCGCCACATCTTGTGCGTCGttggc < 1:346615‑M2/90‑6 (MQ=255) tGGCCTTGTCCGTCAAAAAAGAGAATTGTCGGTAGGCCAAGGACATTAAGATGCTTTAACAGCGCCACATCTTGTGCGTCGTTGGCCGTg < 1:384861/90‑1 (MQ=255) ttGTCCGTCAAAAAAGAGAATTGTCGGTAGGCCAAcgacgcacaagatgtggcgctgttaaagc < 2:322801‑M1/64‑30 (MQ=255) ttGTCCGTCAAAAAAGAGAATTGTCGGTAGGCCAAcgacgcacaagatgtggcgctgttaaagc > 1:322801‑M1/1‑35 (MQ=255) tGTCCGTCAAAAAAGAGAATTGTCGGTAGGCCAAGGACATTAAGATGCTTTAACAGCGCCACATCTTGTGCGTCGTTGGCCGTGACGTTg > 1:649889/1‑90 (MQ=255) tGTCCGTCAAAAAAGAGAATTGTCGGTAGGCCAAGGACATTAAGATGCTTTAACAGCGCCACATCTTGTGCGTCGTTGGCCGTGACGTTg > 2:43404/1‑90 (MQ=255) tGTCCGTCAAAAAAGAGAATTGTCGGTAGGCCAAGGACATTAAGATGCTTTAACAGCGCCACATCTTGTGCGTCGTTGGCCGTGACGTTg > 2:126816/1‑90 (MQ=255) tGTCCGTCAAAAAAGAGAATTGTCGGTAGGCCAAGGACATTAAGATGCTTTAACAGCGCCACATCTTGTGCGTCGTTGGCCGTGACGTTg > 2:592880/1‑90 (MQ=255) tGTCCGTCAAAAAAGAGAATTGTCGGTAGGCCAAGGACATTAAGATGCTTTAACAGCGCCACATCTTGTGCGTCGTTGGCCGTGACGTTg > 2:653254/1‑90 (MQ=255) cGTCAAAAAAGAGAATTGTCGGTAGGCCAAGGACATTAAGATGCTTTAACAGCGCCACATCTTGTGCGTCGTTGGCCGTGACGTTGGCCt < 2:720750/90‑1 (MQ=255) cGTCAAAAAAGAGAATTGTCGGTAGGCCAAGGACATTAAGATGCTTTAACAGCGCCACATCTTGTGCGTCGTTGGCCGTGACGTTGGCCt < 1:361658/90‑1 (MQ=255) cGTCAAAAAAGAGAATTGTCGGTAGGCCAAGGACATTAAGATGCTTTAACAGCGCCACATCTTGTGCGTCGTTGGCCGTGACGTTGGCCt < 1:15972/90‑1 (MQ=255) cGTCAAAAAAGAGAATTGTCGGTAGGCCAAGGACATTAAGATGCTTTAACAGCGCCACATCTTGTGCGTCGTTGGCCGTGACGTTGGCCt < 1:196582/90‑1 (MQ=255) cGTCAAAAAAGAGAATTGTCGGTAGGCCAAGGACATTAAGATGCTTTAACAGCGCCACATCTTGTGCGTCGTTGGCCGTGACGTTGGCCt < 1:300687/90‑1 (MQ=255) cGTCAAAAAAGAGAATTGTCGGTAGGCCAAGGACATTAAGATGCTTTAACAGCGCCACATCTTGTGCGTCGTTGGCCGTGACGTTGGCCt < 1:388820/90‑1 (MQ=255) gTCAAAAAAGAGAATTGTCGGTAGGCCAAGGACATTAAGATGCTTTAACAGCGCCACCTCTTGTGCGTCGTTGGCCGTGACGTTGGCCt < 1:4174/89‑1 (MQ=255) gTCAAAAAAGAGAATTGTCGGTAGGCCAAGGACATTAAGATGCTTTAACAGCGCCACATCTTGTGCGTCGTTGGCCGTGACGTTGGCCt > 2:4174/1‑89 (MQ=255) tCAAAAAAGAGAATTGTCGGTAGGCCAAGGACATTAAGATGCTTTAACAGCGCCACATCTTGTGCGTCGTTGGCCGTGACGTTGGCCTGa < 2:348492/90‑1 (MQ=255) aaaaGAGAATTGTCGGTAGGCCAAGGACATTAAGATGCTTTAACAGCGCCACATCTTGTGCGTCGTTGGCCGTGACGTTGGCCTGAAGTa < 1:387504/90‑1 (MQ=255) aaaaGAGAATTGTCGGTAGGCCAAGGACATTAAGATGCTTTAACAGCGCCACATCTTGTGCGTCGTTGGCCGTGACGTTGGCCTGAAGTa < 1:774376/90‑1 (MQ=255) agagAATTGTCGGTAGGCCAAGGACATTAAGATGCTTTAACAGCGCCACATCTTGTGCGTCGTTGGCCGTGACGTTGGCCTGAAGTAAGa < 2:481704/90‑1 (MQ=255) gagaATTGTCGGTAGGCCAAGGACATTAAGATGCTTTAACAGCGCCACATCTTGTGCGTCGTTGGCCGTGACGTTGGCCTGAAGTAAGAc > 1:457780/1‑90 (MQ=255) gagaATTGTCGGTAGGCCAAGGACATTAAGATGCTTTAACAGCGCCACATCTTGTGCGTCGTTGGCCGTGACGTTGGCCTGAAGTAAGAc < 1:219826/90‑1 (MQ=255) ttGTCGGTAGGCCAAGGACATTAAGATGCTTTAACAGCGCCACATCTTGTGCGTCGTTGGCCGTGACGTTGGCCTGAAGTAAGACCgtgt < 1:683967/90‑1 (MQ=255) tGTCGGTAGGCCAAGGACATTAAGATGCTTTAACAGCGCCACATCTTGTGCGTCGTTGGCCGTGACGTTGGCCTGAAGTAAGACCGTGTc < 2:335285/90‑1 (MQ=255) gTCGGTAGGCCAAGGACATTAAGATGCTTTAACAGCGCCACATCTTGTGCGTCGTTGGCCGTGACGTTGGCCTGAAGTAAGACCGTGTCt > 2:705423/1‑90 (MQ=255) gCCAAcgacgcacaagatgtggcgctgttaaagcatcttaatgtccttggcctaccgacaattctcttttttgacggacaaggccaggag < 1:360562‑M1/90‑86 (MQ=255) gCCAAcgacgcacaagatgtggcgctgttaaagcatcttaatgtccttggcctaccgacaattctcttttttgacggacaaggccaggag < 1:346615‑M1/90‑86 (MQ=255) | GAAGGTTTCAGCATCCATAAAGCCCGTGACGCGTGCTTGTGGATGCTCCTGGCCTTGTCCGTCAAAAAAGAGAATTGTCGGTAGGCCAAGGACATTAAGATGCTTTAACAGCGCCACATCTTGTGCGTCGTTGGCCGTGACGTTGGCCTGAAGTAAGACCGTGTCTGCTAACGC > NZ_CP009273/4353192‑4353365 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |