| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 2282398 = | NA (NA) | 41 (1.290) | 20/166 | 0.3 | 100% | pseudogene (3/2532 nt) | yejO | autotransporter YejO |
| ? | NZ_CP009273 | = 3629487 | 0 (0.000) | intergenic (+234/+81) | yhiM/yhiN | DUF2776 domain‑containing protein/NAD(P)/FAD‑dependent oxidoreductase | |||||
ATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP009273/2282485‑2282398‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTAATGAGCCCGTGAACTGAAACCCTCCATGCTTAATATAAGGTGGATGGAAAGGTGATTGAAAACTCACTCAGTGGCCAGATCTTT < NZ_CP009273/3629487‑3629401 ATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCT > 1:438187/1‑90ATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCT < 2:231555/90‑1ATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCT > 2:86638/1‑90ATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCT > 1:521966/1‑90 TTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTA > 2:157460/1‑90 TTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTA > 1:834278/1‑90 GAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCG > 2:850115/1‑90 AAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGT < 2:370442/90‑1 AAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGA < 2:581171/90‑1 GCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAA > 1:594117/1‑90 GCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAA < 1:777678/90‑1 GCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAA < 2:242768/90‑1 GCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAA < 1:850115/90‑1 CATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCA < 2:825064/90‑1 CATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCA < 2:312986/90‑1 CATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCA < 2:841639/90‑1 CATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCA < 2:165539/90‑1 CATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCA < 1:205736/90‑1 CATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCA < 2:137461/90‑1 CATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCA < 2:853098/90‑1 CATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCA < 1:498103/90‑1 CATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCA < 1:460578/90‑1 GAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCATGC > 1:912425/1‑90 AAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCATGCT < 2:295440/90‑1 AGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCATGCTT < 1:142829/90‑1 AGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCATGCTT < 2:594117/90‑1 AATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCATGCTTAAT > 1:942322/1‑90 GTCAGCCGAGAAGAATTTCCCCGCTTATTCGAAACTTCCCTAATGAGCCCGGGAAAAGAAACCCTCCATTTTTAATATAAGCTGGTTGGA > 1:818794/1‑90 CGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCATGCTTAATATAAGGTGGATGGAAAGGTG < 2:436131/90‑1 GAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCATGCTTAATATAAGGTGGATGGAAAGGTGATT < 2:942322/90‑1 AATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCATGCTTAATATAAGGTGGATGGAAAGGTGATTGAAA < 2:5599/90‑1 AATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCATGCTTAATATAAGGTGGATGGAAAGGTGATTGAAA < 2:247373/90‑1 AATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCATGCTTAATATAAGGTGGATGGAAAGGTGATTGAAA < 2:91157/90‑1 GCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCATGCTTAATATAAGGTGGATGGAAAGGTGATTGAAA < 2:778732/81‑1 GCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCATGCTTAATATAAGGTGGATGGAAAGGTGATTGAAA > 1:778732/1‑81 CTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCATGCTTAATATAAGGTGGATGGAAAGGTGATTGAAAACTCACTCAG < 2:187620/90‑1 CCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCATGCTTAATATAAGGTGGATGGAAAGGTGATTGAAAACTCACTCAGTGGCC < 2:768671/85‑1 CCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCATGCTTAATATAAGGTGGATGGAAAGGTGATTGAAAACTCACTCAGTGGCC > 1:768671/1‑85 TTCCCTAATGAGCCCGTGAACTGAAACCCTCCATGCTTAATATAAGGTGGATGGAAAGGTGATTGAAAACTCACTCAGTGGCCAGATCTT > 2:609918/1‑90 TCCCTAATGAGCCCGTGAACTGAAACCCTCCATGCTTAATATAAGGTGGATGGAAAGGTGATTGAAAACTCACTCAGTGGCCAGATCTTT > 1:820379/1‑90 TCCCTAATGAGCCCGTGAACTGAAACCCTCCATGCTTAATATAAGGTGGATGGAAAGGTGATTGAAAACTCACTCAGTGGCCAGATCTTT > 1:820378/1‑90 ATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP009273/2282485‑2282398‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTAATGAGCCCGTGAACTGAAACCCTCCATGCTTAATATAAGGTGGATGGAAAGGTGATTGAAAACTCACTCAGTGGCCAGATCTTT < NZ_CP009273/3629487‑3629401 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |