New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	360104 =	NA (NA)	48 (1.510)	28/166	0.1	NA	intergenic (‑35/+251)	lacZ/BW25113_RS23320	beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein
	?	NZ_CP009273	= 360286	NA (NA)					intergenic (‑217/+69)	lacZ/BW25113_RS23320	beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein

TACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCT‑GCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCC  >  NZ_CP009273/360033‑360193                                                                        |                                                                                           tACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATgg                                                                          >  1:899703/1‑90 (MQ=255) tACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATgg                                                                          >  2:299408/1‑90 (MQ=255)     aTCCAGCGCCACCATCCAGTGCAGGAGCTCCGAGGGTAAGCTGTCAAACATGCGAATTCCGATCCCCAATTCCTGGCAGTTTATtgcggg                                                                      >  1:746954/1‑90 (MQ=255)       ccAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcggggg                                                                    >  2:400015/1‑88 (MQ=255)          gcgcCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTcc                                                                 <  2:413609/90‑1 (MQ=255)              caccaTCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCT‑Gcc                                                            <  2:146545/90‑1 (MQ=255)               accaTCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGGGGGCT‑Gccc                                                           >  1:670297/1‑90 (MQ=255)                       gTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCT‑g                                                              <  2:13754/79‑1 (MQ=255)                         gCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCT‑GCCCGCCACCCTcc                                                 <  1:151993/90‑1 (MQ=255)                         gCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCT‑GCCCGCCACCCTcc                                                 <  1:634296/90‑1 (MQ=255)                                cTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCT‑GCCCGCCACCCTCCGGGCCGt                                          <  2:299425/90‑1 (MQ=255)                                    gatgatAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGGCCTCCCCCCCCCCCCCCCGGGCCGtgct                                       >  2:555180/1‑87 (MQ=37)                                          aaGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCT‑GCCCGCCACCCTCCGGGCCGTTGCTTCGCaa                                <  2:899703/90‑1 (MQ=255)                                          aaGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCT‑GCCCGCCACCCTCCGGGCCGTTGCTTCGCaa                                <  1:1524/90‑1 (MQ=255)                                                              tCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCT‑GCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCcggc            <  2:600624/90‑1 (MQ=255)                                                                   tCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCT‑GCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGAtt       <  1:575614/90‑1 (MQ=255)                                                                   tCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCT‑GCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGAtt       <  2:893595/90‑1 (MQ=255)                                                                   tCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCT‑GCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGAtt       <  1:112742/90‑1 (MQ=255)                                                                       cAATTCCTGGCAGTTTATGGCGGGCGGCCC‑GCCCCCCCCCCCCCCGGCCGGTGCTTCGCAACGTTCAAAACCCCCCCCCGCGGGTTTTTc   >  2:155992/1‑90 (MQ=2)                                                                        aaTTCCTGGCAGTTTATGGCGGGCGTCCT‑GCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc  <  1:85724/90‑1 (MQ=35)                                                                        aaTTCCTGGCAGTTTATGGCGGGCGTCCT‑GCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc  <  1:433961/90‑1 (MQ=35)                                                                        aaTTCCTGGCAGTTTATGGCGGGCGTCCT‑GCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc  <  2:429858/90‑1 (MQ=35)                                                                        aaTTCCTGGCAGTTTATGGCGGGCGTCCT‑GCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc  <  2:670297/90‑1 (MQ=35)                                                                        aaTTCCTGGCAGTTTATGGCGGGCGTCCT‑GCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc  <  2:725532/90‑1 (MQ=35)                                                                        aaTTCCTGGCAGTTTATGGCGGGCGTCCT‑GCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc  <  2:760913/90‑1 (MQ=35)                                                                        |                                                                                           TACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCT‑GCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCC  >  NZ_CP009273/360033‑360193

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.