| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 2772304 = | 29 (0.910) | 6 (0.190) | 6/166 | 1.8 | 17.1% | coding (3782/4581 nt) | ypjA | adhesin‑like autotransporter YpjA/EhaD |
| ? | NZ_CP009273 | = 2991050 | NA (NA) | intergenic (‑91/+1) | BW25113_RS14875/BW25113_RS14890 | IS3‑like element IS2 family transposase/glycoside hydrolase family 15 protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCGCCCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAATACTGTTTAGCTCAGCATCAAATACCAACGGTAATGTTGCTGCCATATTGAG > NZ_CP009273/2772216‑2772392 | tCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCGCCCCCCAGACATTATTGTtgtg > 2:638899/1‑90 (MQ=255) cGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCGCCCCCCAGACATTATTGTtgtgtg < 1:756495/90‑1 (MQ=255) gCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCGCCCCCCAGACATTATTGTTGTGTGGACTCGCTTTCa > 2:518602/1‑90 (MQ=255) tagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaTGTGGACTCGCTTTCATTATGTTCaa < 2:768391‑M1/26‑1 (MQ=255) cACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCGCCCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAAcc < 1:802418/90‑1 (MQ=255) cccGCATCGGTGGTGACATTATTACGGGTGTTATACGTCGCCCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGc < 1:929833/90‑1 (MQ=255) aTCGGTGGTGACATTATTACGGGTGTTATACGTCGCCCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTcgcg < 1:59990/90‑1 (MQ=255) tatcacttatttaagtgatattggttgtctggagattcagggggccagtctaTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAAt > 2:710977‑M1/53‑90 (MQ=255) ggtggtGACATTATTACGGGTGTTATACGTCGCCCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAAt < 1:528780/90‑1 (MQ=255) tcacttatttaagtgatattggttgtctggagattcagggggccagtctaTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAATAc > 1:289229‑M1/51‑90 (MQ=255) gACATTATTACGGGTGTTATACGTCGCCCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAATACTGtt > 1:787726/1‑90 (MQ=255) tattaCGGGTGTTATACGTCGCCCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAATACTGTTTAGCt > 1:563747/1‑90 (MQ=255) tattggttgtctggagattcagggggccagtctaTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAATACTGTTTAGCTCAGCATc < 1:872833‑M1/56‑1 (MQ=255) ggTGTTATACGTCGCCCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAATACTGTTTAGCTCAGCATc > 1:845232/1‑90 (MQ=255) ttATACGTCGCCCCCCAGACATTATTGTTGTGTGGACTCGCTTTCAt < 1:179302/47‑1 (MQ=255) ttATACGTCGCCCCCCAGACATTATTGTTGTGTGGACTCGCTTTCAt > 2:179302/1‑47 (MQ=255) ttATACGTCGCCCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAATACTGTTTAGCTCAGCATCAAAt > 2:261582/1‑90 (MQ=255) tataCGTCGCCCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAATACTGTTTAGCTCAGCATCAAATa < 2:845232/90‑1 (MQ=255) aCGTCGCCCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAATACTGTTTAGCTCAGCATCAAATACCa < 1:638899/90‑1 (MQ=255) gTCGCCCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAATACTGTTTAGCTCAGCATCAAATACCAAc > 2:466573/1‑90 (MQ=255) gTCGCCCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAATACTGTTTAGCTCAGCATCAAATACCAAc < 2:7212/90‑1 (MQ=255) tCGCCCCCCAGACATTATTGTTGTGTGGACTCGCTTTCAt > 1:716195/1‑40 (MQ=255) tCGCCCCCCAGACATTATTGTTGTGTGGACTCGCTTTCAt < 2:716195/40‑1 (MQ=255) tCGCCCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAATACTGTTTAGCTCAg < 1:778599/75‑1 (MQ=255) tCGCCCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAATACTGTTTAGCTCAg > 2:778599/1‑75 (MQ=255) tCGCCCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAATACTGTTTAGCTCAGCATCAAATACCAACg > 2:795320/1‑90 (MQ=255) cGCCCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAATACTGTTTAGCTCAGCATCAAATACCAACgg < 2:851553/90‑1 (MQ=255) cAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAATACTGTTTAGCTCAGCATCAAATACCAACGGTAATGtt < 1:518602/90‑1 (MQ=255) gACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAATACTGTTTAGCTCAGCATCAAATACCAACGGTAATGTtgc < 2:759411/90‑1 (MQ=255) ggggccagtctaTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAATACTGTTTAGCTCAGCATCAAATACCAACGGTAATGTtgct < 2:841402‑M1/78‑1 (MQ=255) attattGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAATACTGTTTAGCTCAGCATCAAATACCAACGGTAATGTtgctgc < 1:466573/90‑1 (MQ=255) tattGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAATACTGTTTAGCTCAGCATCAAATACCAACGGTAATGTTGCTGCCa < 2:199896/90‑1 (MQ=255) tgttgtGTGGATTCGCTTTAATTATGTTCAACCGTTCGCAAATACTGTTTAGCTCAGCATCAAATGCCAACGGTAATGTTGCTGCCatat < 1:159438/90‑1 (MQ=255) gtctaTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAATACTGTTTAGCTCAGCATCAAATACCAACGGTAATGTTGCTGCCatat > 1:346050‑M1/6‑90 (MQ=255) gtgtgGACTCGCTTTCATTATGTTCAACCGCTCGCGAATACTGTTTAGCTCAGCATCAAATACCAACGGTAATGTTGCTGCCATATTGAg > 1:507298/1‑90 (MQ=255) | TCCGGTCAGCGTCTGCTCAAACCCGGCACCCGCATCGGTGGTGACATTATTACGGGTGTTATACGTCGCCCCCCAGACATTATTGTTGTGTGGACTCGCTTTCATTATGTTCAACCGCTCGCGAATACTGTTTAGCTCAGCATCAAATACCAACGGTAATGTTGCTGCCATATTGAG > NZ_CP009273/2772216‑2772392 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |