Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	3629488	3632559	3072	43 [0]	[2] 4	yhiN–pitA	yhiN,pitA

CATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAAATAATCACAAGATAACCACTATCAAAATTAGCTCATTTTTAATGCGACTCTAATAATTTTCATCTTTAGGAAATAGGTCAGGACG  >  NZ_CP009273/3629398‑3629575                                                                                          |                                                                                         cATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAg                                                                                          >  2:586021/1‑90 (MQ=255) cATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAg                                                                                          >  2:818794/1‑90 (MQ=255)    aaaGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGgga                                                                                       >  1:820379‑M2/1‑87 (MQ=255)    aaaGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGgga                                                                                       >  1:820378‑M2/1‑87 (MQ=255)     aaGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGggaa                                                                                      >  2:609918‑M2/1‑86 (MQ=255)            ggCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGggaagg                                                                                    <  2:768671‑M2/85‑7 (MQ=255)            ggCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGggaagg                                                                                    >  1:768671‑M2/1‑79 (MQ=255)                 cTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGggaaggtgcgaataag                                                                          <  2:187620‑M2/90‑17 (MQ=255)                           tttCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGggaaggtgcgaataagcggggaaatt                                                                <  2:247373‑M2/90‑27 (MQ=255)                           tttCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGggaaggtgcgaataagcggggaaatt                                                                <  2:5599‑M2/90‑27 (MQ=255)                           tttCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGggaaggtgcgaataagcggggaaatt                                                                <  2:91157‑M2/90‑27 (MQ=255)                           tttCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGggaaggtgcgaataagc                                                                         >  1:778732‑M2/1‑64 (MQ=255)                           tttCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGggaaggtgcgaataagc                                                                         <  2:778732‑M2/81‑18 (MQ=255)                               aaTCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGggaaggtgcgaataagcggggaaattcttc                                                            <  2:942322‑M2/90‑31 (MQ=255)                                  cACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGggaaggtgcgaataagcggggaaattcttctcg                                                         <  2:436131‑M2/90‑34 (MQ=255)                                        tccaaccaGCTTATATTAAAAATGGAGGGTTTCTTTTCCCGGGCTCATTAGggaagtttcgaataagcggggaaattcttctcggctgac                                                   >  1:818794‑M2/1‑51 (MQ=255)                                                      atTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatt                                     >  1:942322‑M2/1‑37 (MQ=255)                                                         aaGCATGGAGGGTTTCAGTTCACGGGCTCATTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttct                                  <  1:142829‑M2/90‑57 (MQ=255)                                                         aaGCATGGAGGGTTTCAGTTCACGGGCTCATTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttct                                  <  2:594117‑M2/90‑57 (MQ=255)                                                          aGCATGGAGGGTTTCAGTTCACGGGCTCATTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttctt                                 <  2:295440‑M2/90‑58 (MQ=255)                                                           gCATGGAGGGTTTCAGTTCACGGGCTCATTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttc                                >  1:912425‑M2/1‑32 (MQ=255)                                                              tGGAGGGTTTCAGTTCACGGGCTCATTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatg                             <  2:825064‑M2/90‑62 (MQ=255)                                                              tGGAGGGTTTCAGTTCACGGGCTCATTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatg                             <  2:841639‑M2/90‑62 (MQ=255)                                                              tGGAGGGTTTCAGTTCACGGGCTCATTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatg                             <  2:853098‑M2/90‑62 (MQ=255)                                                              tGGAGGGTTTCAGTTCACGGGCTCATTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatg                             <  1:205736‑M2/90‑62 (MQ=255)                                                              tGGAGGGTTTCAGTTCACGGGCTCATTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatg                             <  1:460578‑M2/90‑62 (MQ=255)                                                              tGGAGGGTTTCAGTTCACGGGCTCATTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatg                             <  2:165539‑M2/90‑62 (MQ=255)                                                              tGGAGGGTTTCAGTTCACGGGCTCATTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatg                             <  1:498103‑M2/90‑62 (MQ=255)                                                              tGGAGGGTTTCAGTTCACGGGCTCATTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatg                             <  2:137461‑M2/90‑62 (MQ=255)                                                              tGGAGGGTTTCAGTTCACGGGCTCATTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatg                             <  2:312986‑M2/90‑62 (MQ=255)                                                                     tttCAGTTCACGGGCTCATTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagc                      <  2:242768‑M2/90‑69 (MQ=255)                                                                     tttCAGTTCACGGGCTCATTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagc                      <  1:850115‑M2/90‑69 (MQ=255)                                                                     tttCAGTTCACGGGCTCATTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagc                      <  1:777678‑M2/90‑69 (MQ=255)                                                                     tttCAGTTCACGGGCTCATTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagc                      >  1:594117‑M2/1‑22 (MQ=255)                                                                            tCACGGGCTCATTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgatttt               <  2:581171‑M2/90‑76 (MQ=255)                                                                              aCGGGCTCATTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgatttttt             <  2:370442‑M2/90‑78 (MQ=255)                                                                               cGGGCTCATTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttc            >  2:850115‑M2/1‑12 (MQ=255)                                                                                        tAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaa   >  1:834278‑M2/1‑3 (MQ=255)                                                                                        tAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaa   >  2:157460‑M2/1‑3 (MQ=255)                                                                                         aGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat  >  1:521966‑M2/1‑2 (MQ=255)                                                                                         aGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat  >  2:86638‑M2/1‑2 (MQ=255)                                                                                         aGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat  <  2:231555‑M2/90‑89 (MQ=255)                                                                                         aGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat  >  1:438187‑M2/1‑2 (MQ=255)                                                                                          |                                                                                         CATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAAATAATCACAAGATAACCACTATCAAAATTAGCTCATTTTTAATGCGACTCTAATAATTTTCATCTTTAGGAAATAGGTCAGGACG  >  NZ_CP009273/3629398‑3629575

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑