| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 4,102,506 | 0 | T | G | 56.2% | 8.9 / 17.3 | 16 | G88G (GGT→GGG) | yiiR | DUF805 domain‑containing protein |
| Reads supporting (aligned to +/- strand): ref base T (1/6); new base G (9/0); total (10/6) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.74e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.07e-03 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CGCTTGCATGATCGCGGGCGTTCCGGCGCATGGGCATTTCTGATGATTGTGGCGTGGATGCTGCTGGCGGGTAACTGGGCGATTTTACC‑GGGTGTCTGGCAATGGGCGGTGGGGCGTTTTGTCCCGACGTTGATTCTGGTGATGATGCTTATC > NZ_CP009273/4102435‑4102587 | cgcTTGCATGATCGCGGGCGTTCCGGCGCATGGGCATTTCTGATGATTGTGGCGTGGATGCTGCTGGCGGGTAACTGGGCGATTTTACC‑g < 2:278213/90‑1 (MQ=255)cgcTTGCATGATCGCGGGCGTTCCGGCGCATGGGCATTTCTGATGATTGTGGCGTGGATGCTGCTGGCGGGTAACTGGGCGATTTTACC‑g < 2:656132/90‑1 (MQ=255) tGCATGATCGCGGGCGTTCCGGCGCATGGGCATTTCTGATGATTGTGGCGTGGATGCTGCTGGCGGGGAACTGGGGGGTTTTTTC‑ggggg > 2:703297/1‑88 (MQ=255) cgGGCGTTCCGGCGCATGGGCATTTCTGATGATTGTGGCGTGGATGCTGCTGGCGGGGAACTGGGGGGTTTTTCC‑GGGGGTCTGGGAATg > 1:22023/1‑90 (MQ=255) gggCGTTCCGGCGCATGGGCATTTCTGATGATTGTGGCGTGGATGCTGCTGGCGGGGAACTGGGGGGTTTTACC‑GGGGGGCTTGGAATgg > 1:95688/1‑90 (MQ=255) ttCCGGCGCATGGGCATTTCTGATGATTGTGGCGTGGATGCTGCTGGCGGGGAAATGGGGGGTTTTTCCGGGGGGTTTGGCAAGgggggg > 1:79430/1‑90 (MQ=255) ttCCGGCGCATGGGCATTTCTGATGATTGTGGCGTGGATGCTGCTGGCGGGGAAATGGGGGGTTTTTCC‑GGGGGGCTGGGAAAggggggg > 1:477245/1‑89 (MQ=255) ggCGCATGGGCATTTCTGATGATTGTGGCGTGGATGCTGCTGGCGGGTAACTGGGCGATTTTACC‑GGGTGTCTGGCAATGGGCGGTgggg < 2:363605/90‑1 (MQ=255) cATGGGCATTTCTGATGATTGTGGCGTGGATGCTGCTGGCGGGGAAATGGGGGGTTTTTCC‑CGGGGGCTGGGAATGgggggggggggggt > 2:144037/1‑86 (MQ=255) tGGGCATTTCTGATGATTGTGGCGTGGATGCTGCTGGCGGGGAAATGGGGGGTTTTTCC‑GGGGGGCTGGGAATGGGGGGGGGGGGGgttt > 1:169224/1‑90 (MQ=255) ttGTGGCGTGGATGCTGCTGGCGGGGAAATGGGGGGTTTTTCC‑GGGGGTCTGGGAATGGGGGGGGGGGGGGTTTTTTCCGACGGTGGttt > 2:35780/1‑89 (MQ=255) gCGTGGATGCTGCTGGCGGGGAAACGGGGGGTTTTTTC‑GGGGGGCTTGGCATGGGGGGGGGGGGGGTTTGTTCCGGCGGTGGTTTTgggg > 2:668663/1‑88 (MQ=255) gTGGATGCTGCTGGCGGGTAAATGGGCGATTTTTCC‑GGGTGTCTGGCAATGGGGGGGGGGGCGGTTTGTCCCGACGTTGATTTTGGggat > 1:203874/1‑90 (MQ=255) tGGATGCTGCTGGCGGGTAACTGGGCGATTTTACC‑GGGTGTCTGGCAATGGGCGGTGGGGCGTTTTGTCCCGACGTTGATTCTGGtgatg < 1:707265/90‑1 (MQ=255) ctgGCGGGTAACTGGGCGATTTTACC‑GGGTGTCTGGCAATGGGCGGTGGGGCGTTTTGTCCCGACGTTGATTCTGGTGATGATGCTTATc < 1:611729/90‑1 (MQ=255) ctgGCGGGTAACTGGGCGATTTTACC‑GGGTGTCTGGCAATGGGCGGTGGGGCGTTTTGTCCCGACGTTGATTCTGGTGATGATGCTTATc < 2:95688/90‑1 (MQ=255) | CGCTTGCATGATCGCGGGCGTTCCGGCGCATGGGCATTTCTGATGATTGTGGCGTGGATGCTGCTGGCGGGTAACTGGGCGATTTTACC‑GGGTGTCTGGCAATGGGCGGTGGGGCGTTTTGTCCCGACGTTGATTCTGGTGATGATGCTTATC > NZ_CP009273/4102435‑4102587 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |