Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1191295	1191307	13	2 [0]	[0] 2	icd	NADP‑dependent isocitrate dehydrogenase

CTCTGTGACTCTGGTGCACAAAGGCAACATCATGAAGTTCACCGAAGG  >  NZ_CP009273/1191247‑1191294                                                | ctctgtgactctgGTGCACAAAGGCAACATCATGAAGTTCACCGAAgg  >  1:66595/1‑48 (MQ=255) ctctgtgactctgGTGCACAAAGGCAACATCATGAAGTTCACCGAAgg  <  2:66595/48‑1 (MQ=255)                                                | CTCTGTGACTCTGGTGCACAAAGGCAACATCATGAAGTTCACCGAAGG  >  NZ_CP009273/1191247‑1191294

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑