Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	3969691	3969707	17	2 [1]	[1] 4	wzxE	lipid III flippase WzxE

TGGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGCGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTG  >  NZ_CP009273/3969705‑3969797    |                                                                                          tGGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGCGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGc     <  1:392303/90‑1 (MQ=255)    tCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGGTTTGGGTGGGGGGAAATTTTCGCCCGTTTGTTTCCGTGGTCGGCGTGCTTg  >  1:299431/1‑90 (MQ=255)    tCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTTGGCTGGCGGGAAATTTTCGCCAGTTGATTTCCGTGGTCGGCGTGCTTg  >  1:144935/1‑90 (MQ=255)    tCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGCGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTg  >  2:303896/1‑90 (MQ=255)    |                                                                                          TGGTCGGTAAGTTGCTGGCGGTGTCATTTGGTCCGGCGGGGCTTGGGCTGGCGGCAAATTTCCGCCAGTTGATTACCGTGCTCGGCGTGCTTG  >  NZ_CP009273/3969705‑3969797

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑