Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1188148	1188158	11	3 [1]	[0] 3	mnmA	tRNA 2‑thiouridine(34) synthase MnmA

GCCACCGAGGCACACTTCACCGTTATAGAAGACGGCAGACTGGCCCGGCGTCACGGCGGCAACCGGTTCATCGAAAATCACTTCAATGCG  >  NZ_CP009273/1188159‑1188248 |                                                                                          gCCACCGAGGCACACTTCACCGTTATAGAAGACGGCAGACTGGCCCGGCGTCACGGCGGCAACCGGTTCATCGAAAATCACTTCAATGCg  >  2:236521/1‑90 (MQ=255) gCCACCGAGGCACACTTCACCGTTATAGAAGACGGCAGACTGGCCCGGCGTCACGGCGGCAACCGGTTCATCGAAAATCACTTCAATGCg  >  2:398608/1‑90 (MQ=255) gCCACCGAGGCACACTTCACCGTTATAGAAGACGGCAGACTGGCCCGGCGTCACGGCGGCAACCGGTTCATCGAAAATCACATCAATGCg  >  2:341746/1‑90 (MQ=255) |                                                                                          GCCACCGAGGCACACTTCACCGTTATAGAAGACGGCAGACTGGCCCGGCGTCACGGCGGCAACCGGTTCATCGAAAATCACTTCAATGCG  >  NZ_CP009273/1188159‑1188248

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑