| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,832,718 | 0 | T | G | 68.4% | 6.9 / 13.5 | 19 | intergenic (‑95/‑165) | ascG/ascF | DNA‑binding transcriptional regulator AscG/PTS cellobiose/arbutin/salicin transporter subunit IIBC |
| Reads supporting (aligned to +/- strand): ref base T (2/4); new base G (13/0); total (15/4) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.87e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.34e-03 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
TCCCTTTACACGCAATCAACGCAGTGTACTGCACCGTTTGCCGATTGTCCTTGCACAATCGGCGGGAAAAATATTCAGGTGACCGGTTTCACAAATATAAAAAATGAACAATTCACTCTCTTGCTTATTTAGTGACAACTATTCATGATTTTGTGAAACCGGTTT > NZ_CP009273/2832632‑2832796 | tCCCTTTACACGCAATCAACGCAGTGTACTGCACCGTTTGCCGATTGTCCTTGCACAATCGGCGGGAAAAATATTCAGGTGACCGGTTTc < 2:85122/90‑1 (MQ=255) cccTTTACACGCAATCAACGCAGTGTACTGCACCGTTTGCCGATTGTCCTTGCACAATCGGCGGGAAAAAAATTTAGGGGGCCGGGTTca > 1:117846/1‑90 (MQ=255) cccTTTACACGCAATCAACGCAGTGTACTGCACCGTTTGCCGATTGTCCTTGCACAATCGGCGGGAAAAAAATTCAGGTGGCCGGGTTca > 1:447616/1‑90 (MQ=255) tttACACGCAATCAACGCAGTGTACTGCACCGTTTGCCGATTGTCCTTGCACAATCGGCGGGAAAAATATTCAGGTGACCGGTTTCACaa < 1:294763/90‑1 (MQ=255) tgtACTGCACCGTTTGCCGATTGTCCTTGCACAATCGGCGGGAAAAATATTTAGGGGACCGGGTTCACAAATATAAAAAAAGAACAAATc > 2:217158/1‑90 (MQ=255) cTGCACCGTTTGCCGATTGTCCTTGCACAATCGGCGGGAAAAATATTCGGGGGACCGGGTTCACAAATATAAAAAATGAACAATTCActc > 2:127509/1‑90 (MQ=255) tGCACCGTTTGCCGATTGTCCTTGCACAATCGGCGGGGAAAATATTCAGGGGGCCGGGTTCACAAAAATAAAAAAAGAACAAATCActct > 1:339333/1‑90 (MQ=255) aCCGTTTGCCGATTGTCCTTGCACAATCGGCGGGAAAAATATTCAGGTGACCGGTTTCACAAATATAAAAAATGAACAATTCACTCTCtt < 2:253989/90‑1 (MQ=255) ccGTTTGCCGATTGTCCTTGCACAATCGGCGGGAAAAATATTCAGGTGACCGGGTTCACAAATATAAAAAATGAACAATTCACTCTCTTg > 2:412360/1‑90 (MQ=255) ccGTTTGCCGATTGTCCTTGCACAATCGGCGGGAAAAATATTCAGGTGACCGGGTTCACAAATATAAAAAATGAACAATTCACTCTCTTg > 2:131820/1‑90 (MQ=255) ccGTTTGCCGATTGTCCTTGCACAATCGGCGGGAAAAAAATTTAGGGGACCGGGTTCACAAAAATAAAAAAAGAACAATTTACTCTCttt > 1:101458/1‑89 (MQ=255) gTTTGCCGATTGTCCTTGCACAATCGGCGGGGAAAATATTCAGGTGACCGGGTTCACAAATATAAAAAAAGAACAATTCACTCTCTTGCt > 1:316764/1‑90 (MQ=255) gTTTGCCGATTGTCCTTGCACAATCGGCGGGAAAAATATTTAGGTGACCGGGTTCACAAATATAAAAAATGAAAAAATCACTCTCTTGCt > 2:260190/1‑90 (MQ=255) gTTTGCCGATTGTCCTTGCACAATCGGCGGGAAAAATATTTAGGGGACCCGGTTCACAAATATAAAAAAAGAACAAATTACTCTCTTTCt > 1:268884/1‑90 (MQ=255) gTTTGCCGATTGTCCTTGCACAATCGGCGGGAAAAATATTCAGGTGACCGGTTTCACAAATATAAAAAATGAACAATTCACTCTCTTGCt > 2:103729/1‑90 (MQ=255) gTTTGCCGATTGTCCTTGCACAATCGGCGGGAAAAATATTCAGGTGACCGGGTTCACAAATATAAAAAATGAACAATTTACTCTCTTGCt > 2:285434/1‑90 (MQ=255) gTTTGCCGATTGTCCTTGCACAATCGGCGGGAAAAATATTCAGGGGACCGGGTTCACAAATATAAAAAATGAACAATTCACTCTCTTGCt > 2:254987/1‑90 (MQ=255) gCCGATTGTCCTTGCACAATCGGCGGGAAAAATATTCAGGTGACCGGTTTCACAAATATAAAAAATGAACAATTCACTCTCTTGCTTAtt < 1:268129/90‑1 (MQ=255) cAGGTGACCGGTTTCACAAATATAAAAAATGAACAATTCACTCTCTTGCTTATTTAGTGACAACTATTCATGATTTTGTGAAACCGGttt > 1:41748/1‑90 (MQ=255) | TCCCTTTACACGCAATCAACGCAGTGTACTGCACCGTTTGCCGATTGTCCTTGCACAATCGGCGGGAAAAATATTCAGGTGACCGGTTTCACAAATATAAAAAATGAACAATTCACTCTCTTGCTTATTTAGTGACAACTATTCATGATTTTGTGAAACCGGTTT > NZ_CP009273/2832632‑2832796 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |