| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 1686630 = | 5 (0.270) | 13 (0.710) | 3/166 | 1.7 | 72.5% | coding (479/1266 nt) | uidC | glucuronide uptake porin UidC |
| ? | NZ_CP009273 | 2095231 = | NA (NA) | intergenic (‑1/+145) | wbbL/BW25113_RS10605 | N‑acetylglucosaminyl‑diphospho‑decaprenol L‑rhamnosyltransferase WbbL/IS5‑like element IS5 family transposase | |||||
CACGAATACCGGTTGTTGAATCAGTCCATAAAAATACTCGTGAACGCCACATTCCCCACAGATCAATATTTGGTGTTAAAGCCCAATAACCTAATGCTCCTTCAGAAACTGTCGGTAATGTACGTTGCGAACTGCCAGCCATTAACGGAATACGATAAGGTAAGCTACCATAACTAT > NZ_CP009273/1686541‑1686717 | gcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcc > 2:117828‑M1/90‑90 (MQ=255) catttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccc > 1:436387‑M1/89‑90 (MQ=255) cattcacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccc > 1:215622‑M1/89‑90 (MQ=255) aCGAATACCGGTTGTTGAATCAGTCCATAAAAATACTCGTGAACGCCACATTCCCCACAGATCAATATTTGGTGTTAAAGCCCAATAAcc > 2:68706/1‑90 (MQ=255) atttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagactttccccgcttattcgcaacttcCCt < 1:114470‑M1/3‑1 (MQ=255) atttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcCCt > 1:467679‑M1/88‑90 (MQ=255) tttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcCCTa < 2:452184‑M1/4‑1 (MQ=255) tttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcCCTa < 2:288605‑M1/4‑1 (MQ=255) tttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcCCTa < 1:299837‑M1/4‑1 (MQ=255) tttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcCCTa < 2:256938‑M1/4‑1 (MQ=255) tttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcCCTa < 1:95348‑M1/4‑1 (MQ=255) ttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcCCTaa < 1:178362‑M1/5‑1 (MQ=255) ttgttgAATCAGTCCATAAAAATACTCGTGAACGCCACATTCCCCACAGATCAATATTTGGTGTTAAAGCCCAATAACCTAAggaaggtg > 2:96672‑M1/1‑82 (MQ=255) cATAAAAATACTCGTGAACGCCACATTCCCCACAGATCAATATTTGGTGTTAAAGCCCAATAACCTAAggaaggtgcgaacaagtccctg < 1:96672‑M1/90‑23 (MQ=255) gAACGCCACATTCCCCACAGATCAATATTTGGTGTTAAAGCCCAATAACCTAAggaaggtgcgaac < 1:534670‑M1/66‑14 (MQ=255) gAACGCCACATTCCCCACAGATCAATATTTGGTGTTAAAGCCCAATAACCTAAggaaggtgcgaac > 2:534670‑M1/1‑53 (MQ=255) gccgagaagaatttccccgcttattcgcaccttcCCTAATGCTCCTTCAGAAACTGTCGGTAATGTACGTTGCGAACTGCCAGCCATTaa > 2:207123‑M1/35‑90 (MQ=255) aGATCAATATTTGGTGTTAAAGCTCAATAACCTAATGCTCCTTCAGAAACTGTCGGTAATGTACGTTGCGAACTGCCAGCCATTAACGGa > 1:229451/1‑90 (MQ=255) gaagaatttccccgcttattcgcaccttcCCTAATGCTCCTTCAGAAACTGTCGGTAATGTACGTTGCGAACTGCCAGCCATTAACGGaa < 1:316517‑M1/61‑1 (MQ=255) aTCAATATTTGGTGTTAAAGCCCAATAACCTAATGCTCCTTCAGAAACTGTCGGTAATGTACGTTGCGAACTGCCAGCCATTAACGGAAt < 1:68706/90‑1 (MQ=255) cAATATTTGGTGTTAAAGCCCAATAACCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctgga < 1:413649‑M1/79‑49 (MQ=255) cAATATTTGGTGTTAAAGCCCAATAACCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctgga > 2:413649‑M1/1‑31 (MQ=255) atTTGGTGTTAAAGCCCAATAACCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggt < 2:145086‑M1/90‑64 (MQ=255) ttAAAACCCAATAACCTAATGCTCCTTCAGAAACTGTCGGTAATGTACGTTGCGAACTGCCAGCCATTAACGGAATACGATAAGGTAAGc > 1:103062/1‑90 (MQ=255) gCCCAATAACCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccataggacagggttcatcatgagtca < 2:145333‑M1/90‑77 (MQ=255) gCCCAATAACCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtca < 1:159698‑M1/90‑77 (MQ=255) aaTAACCTAATGCTCCTTCAGAAACTGTCGGTAATGTACGTTGCGAACTGCCAGCCATTAACGGAATACGATAAGGTAAGCTACCATAAc > 2:524358/1‑90 (MQ=255) tcCCTAATGCTCCTTCAGAAACTGTCGGTAATGTACGTTGCGAACTGCCAGCCATTAACGGAATACGATAAGGTAAGCTACCATAACtat < 1:100795‑M1/88‑1 (MQ=255) | CACGAATACCGGTTGTTGAATCAGTCCATAAAAATACTCGTGAACGCCACATTCCCCACAGATCAATATTTGGTGTTAAAGCCCAATAACCTAATGCTCCTTCAGAAACTGTCGGTAATGTACGTTGCGAACTGCCAGCCATTAACGGAATACGATAAGGTAAGCTACCATAACTAT > NZ_CP009273/1686541‑1686717 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |