| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 1686634 | 6 (0.320) | 9 (0.490) | 8/168 | 0.7 | 60.0% | coding (475/1266 nt) | uidC | glucuronide uptake porin UidC |
| ? | NZ_CP009273 | = 2283592 | NA (NA) | intergenic (‑68/‑387) | BW25113_RS11435/narP | IS5‑like element IS5 family transposase/nitrate/nitrite response regulator protein NarP | |||||
AATACCGGTTGTTGAATCAGTCCATAAAAATACTCGTGAACGCCACATTCCCCACAGATCAATATTTGGTGTTAAAGCCCAATAACCTAATGCTCCTTCAGAAACTGTCGGTAATGTACGTTGCGAACTGCCAGCCATTAACGGAATACGATAAGGTAAGCTACCATAACTATAATC > NZ_CP009273/1686545‑1686721 | ttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcCCTaa < 1:178362‑M1/5‑1 (MQ=255) ttgttgAATCAGTCCATAAAAATACTCGTGAACGCCACATTCCCCACAGATCAATATTTGGTGTTAAAGCCCAATAACCTAAggaaggtg > 2:96672‑M1/1‑82 (MQ=255) cATAAAAATACTCGTGAACGCCACATTCCCCACAGATCAATATTTGGTGTTAAAGCCCAATAACCTAAggaaggtgcgaacaagtccctg < 1:96672‑M1/90‑23 (MQ=255) gAACGCCACATTCCCCACAGATCAATATTTGGTGTTAAAGCCCAATAACCTAAggaaggtgcgaac < 1:534670‑M1/66‑14 (MQ=255) gAACGCCACATTCCCCACAGATCAATATTTGGTGTTAAAGCCCAATAACCTAAggaaggtgcgaac > 2:534670‑M1/1‑53 (MQ=255) gccgagaagaatttccccgcttattcgcaccttcCCTAATGCTCCTTCAGAAACTGTCGGTAATGTACGTTGCGAACTGCCAGCCATTaa > 2:207123‑M1/35‑90 (MQ=255) aGATCAATATTTGGTGTTAAAGCTCAATAACCTAATGCTCCTTCAGAAACTGTCGGTAATGTACGTTGCGAACTGCCAGCCATTAACGGa > 1:229451/1‑90 (MQ=255) gaagaatttccccgcttattcgcaccttcCCTAATGCTCCTTCAGAAACTGTCGGTAATGTACGTTGCGAACTGCCAGCCATTAACGGaa < 1:316517‑M1/61‑1 (MQ=255) aTCAATATTTGGTGTTAAAGCCCAATAACCTAATGCTCCTTCAGAAACTGTCGGTAATGTACGTTGCGAACTGCCAGCCATTAACGGAAt < 1:68706/90‑1 (MQ=255) cAATATTTGGTGTTAAAGCCCAATAACCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctgga < 1:413649‑M1/79‑49 (MQ=255) cAATATTTGGTGTTAAAGCCCAATAACCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctgga > 2:413649‑M1/1‑31 (MQ=255) atTTGGTGTTAAAGCCCAATAACCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggt < 2:145086‑M1/90‑64 (MQ=255) ttAAAACCCAATAACCTAATGCTCCTTCAGAAACTGTCGGTAATGTACGTTGCGAACTGCCAGCCATTAACGGAATACGATAAGGTAAGc > 1:103062/1‑90 (MQ=255) gCCCAATAACCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccataggacagggttcatcatgagtca < 2:145333‑M1/90‑77 (MQ=255) gCCCAATAACCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtca < 1:159698‑M1/90‑77 (MQ=255) aaTAACCTAATGCTCCTTCAGAAACTGTCGGTAATGTACGTTGCGAACTGCCAGCCATTAACGGAATACGATAAGGTAAGCTACCATAAc > 2:524358/1‑90 (MQ=255) tcCCTAATGCTCCTTCAGAAACTGTCGGTAATGTACGTTGCGAACTGCCAGCCATTAACGGAATACGATAAGGTAAGCTACCATAACtat < 1:100795‑M1/88‑1 (MQ=255) cTAATGCTCCTTCAGAAACTGTCGGTAATGTACGTTGCGAACTGCCAGCCATTAACGGAATACGATAAGGTAAGCTACCATAACTATAAt > 2:226929/1‑90 (MQ=255) tAATGCTCCTTCAGAAACTGTCGGTAATGTACGTTGCGAACTGCCAGCCATTAACGGAATACGATAAGGTAAGCTACCATAACTATAATc < 2:100795/90‑1 (MQ=255) | AATACCGGTTGTTGAATCAGTCCATAAAAATACTCGTGAACGCCACATTCCCCACAGATCAATATTTGGTGTTAAAGCCCAATAACCTAATGCTCCTTCAGAAACTGTCGGTAATGTACGTTGCGAACTGCCAGCCATTAACGGAATACGATAAGGTAAGCTACCATAACTATAATC > NZ_CP009273/1686545‑1686721 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |