Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1972752	1972775	24	30 [0]	[1] 2	flhD/uspC	flagellar transcriptional regulator FlhD/universal stress protein UspC

CGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGG  >  NZ_CP009273/1972667‑1972840                                                                                     |                                                                                          cGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaag                                                                                      >  1:228406‑M1/1‑85 (MQ=255) cGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaag                                                                                      >  2:142783‑M1/1‑85 (MQ=255) cGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaag                                                                                      >  2:401878‑M1/1‑85 (MQ=255)      cTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTGAATTACTTAAggaaggagcg                                                                                 >  2:327320‑M1/1‑80 (MQ=255)      cTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcg                                                                                 >  2:270536‑M1/1‑80 (MQ=255)           cGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaa                                                                            >  2:377563‑M1/1‑75 (MQ=255)             cacaTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagt                                                                          <  2:290952‑M1/90‑18 (MQ=255)             cacaTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagt                                                                          <  1:253816‑M1/90‑18 (MQ=255)                     aCGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccctgata                                                                  >  2:226970‑M1/1‑65 (MQ=255)                         aGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccctgatatgag                                                              >  2:343637‑M1/1‑61 (MQ=255)                         aGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccc                                                                       >  1:392642‑M1/1‑61 (MQ=255)                         aGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccc                                                                       <  2:392642‑M1/81‑21 (MQ=255)                               gCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccctgatatgagatcatg                                                        >  2:466050‑M1/1‑55 (MQ=255)                                            ataatGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctgga                                           <  1:306713‑M1/90‑49 (MQ=255)                                            ataatGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctgga                                           <  1:377563‑M1/90‑49 (MQ=255)                                            ataatGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctgga                                           <  1:515376‑M1/90‑49 (MQ=255)                                               atGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagcc                                        >  1:243929‑M1/1‑39 (MQ=255)                                               atGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagcc                                        >  1:240178‑M1/1‑39 (MQ=255)                                                 gCGTGATGCAGATCACACAAAACACTGAATTACTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccat                                      <  1:327320‑M1/90‑54 (MQ=255)                                                 gCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccat                                      <  1:401878‑M1/90‑54 (MQ=255)                                                 gCGTGAAGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccat                                      <  1:142783‑M1/90‑54 (MQ=255)                                                                cacaAAACACTCAATTACTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatc                       >  2:86278‑M1/1‑22 (MQ=255)                                                                cacaAAACACTCAATTACTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctgga                                           <  2:100463‑M1/70‑49 (MQ=255)                                                                cacaAAACACTCAATTACTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctgga                                           >  1:100463‑M1/1‑22 (MQ=255)                                                                     aaCACTCAATTACTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgag                  >  1:519296‑M1/1‑17 (MQ=255)                                                                         cTCAATTACTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcat              >  1:93231‑M1/1‑13 (MQ=255)                                                                                  ttAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttacc     >  1:295731‑M1/1‑4 (MQ=255)                                                                                   tAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttacct    <  2:173919‑M1/90‑88 (MQ=255)                                                                                   tAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttacct    >  2:456827‑M1/1‑3 (MQ=255)                                                                                     aggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttc  >  2:279973‑M1/1‑1 (MQ=255)                                                                                     |                                                                                          CGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGG  >  NZ_CP009273/1972667‑1972840

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑