| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 471426 | 47 (0.870) | 3 (0.070) | 3/144 | 4.2 | 7.6% | intergenic (+19/+12) | ybaY/BW25113_RS02350 | YbaY family lipoprotein/MGMT family protein |
| ? | NZ_CP009273 | = 471428 | 33 (0.720) | intergenic (+21/+10) | ybaY/BW25113_RS02350 | YbaY family lipoprotein/MGMT family protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GGCGCAACGACTACCGTACCTTCGACTTCACCAACTCAGGTGAATCCGTCTTCGGCAGTTCCAGCTCCTACGCAATATTAAGCGACGTTAACCCTCTCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP009273/471327‑471426‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taaccctctccgGGCGGAGAGGGTTAACGTCGCTTAATATTGCGTAGGAGCTGGAACTGCCGAAGACGGATTCACCTGAGTTGGTGAAGTCGAAGGTA < NZ_CP009273/471428‑471343 GGCGCAACGACTACCGTACCTTCGACTTCACCAACTCAGGTGAATCCGTCTTCGGCAGTTCCAGCTCCTACGCAATATTAAGCGACGTTA > 1:1466829/1‑90GGCGCAACGACTACCGTACCTTCGACTTCACCAACTCAGGTGAATCCGTCTTCGGCAGTTCCAGCTCCTACGCAATATTAAGCGACGTTA > 2:916224/1‑90 CGCAACGACTACCGTACCTTCGACTTCACCAACTCAGGTGAATCCGTCTTCGGCAGTTCCAGCTCCTACGCAATATTAAGCGACGTTAAC < 1:349916/90‑1 TCGGCAGTTCCAGCTCCTACGCAATATTAAGCGACGTTAACCCTCTCCGGGCGGAGAGGGTTAACGTCGCTTAATATTGCGTAGGAGCTG > 1:878179/1‑90 ACGCAATATTAAGCGACGTTAACCCTCTCCGGGCGGAGAGGGTTAACGTCGCTTAATATTGCGTAGGAGCTGGAACTGCCGAAGACGGAT > 1:682994/1‑90 ATTAAGCGACGTTAACCCTCTCCGGGCGGAGAGGGTTAACGTCGCTTAATATTGCGTAGGAGCTGGAACTGCCGAAGACGGATTCACCTG > 1:1089415/1‑90 CCTCTCCGGGCGGAGAGGGTTAACGTCGCTTAATATTGCGTAGGAGCTGGAACTGCCGAAGACGGATTCACCTGAGTTGGTGAAGTCGAA < 2:764718/90‑1 CTCTCCGGGCGGAGAGGGTTAACGTCGCTTAATATTGCGTAGGAGCTGGAACTGCCGAAGACGGATTCACCTGAGTTGGTGAAGTCGAAG < 2:961215/90‑1 TCTCCGGGCGGAGAGGGTTAACGTCGCTTAATATTGCGTAGGAGCTGGAACTGCCGAAGACGGATTCACCTGAGTTGGTGAAGTCGAAGG > 2:1295683/1‑90 TCTCCGGGCGGAGAGGGTTAACGTCGCTTAATATTGCGTAGGAGCTGGAACTGCCGAAGACGGATTCACCTGAGTTGGTGAAGTCGAAGG > 2:94604/1‑90 TCTCCGGGCGGAGAGGGTTAACGTCGCTTAATATTGCGTAGGAGCTGGAACTGCCGAAGACGGATTCACCTGAGTTGGTGAAGTCGAAGG > 2:1560374/1‑90 TCTCCGGGCGGAGAGGGTTAACGTCGCTTAATATTGCGTAGGAGCTGGAACTGCCGAAGACGGATTCACCTGAGTTGGTGAAGTCGAAGG > 2:1434815/1‑90 TCTCCGGGCGGAGAGGGTTAACGTCGCTTAATATTGCGTAGGAGCTGGAACTGCCGAAGACGGATTCACCTGAGTTGGTGAAGTCGAAGG > 1:916224/1‑90 TCTCCGGGCGGAGAGGGTTAACGTCGCTTAATATTGCGTAGGAGCTGGAACTGCCGAAGACGGATTCACCTGAGTTGGTGAAGTCGAAGG > 1:198015/1‑90 TCTCCGGGCGGAGAGGGTTAACGTCGCTTAATATTGCGTAGGAGCTGGAACTGCCGAAGACGGATTCACC > 1:1521360/1‑70 TCTCCGGGCGCAGAGGGTTAACGTCGCTTAATATTGCGTAGGAGCTGGAACTGCCGAAGACGGATTCACC < 2:1521360/70‑1 CTCCGGGCGGAGAGGGTTAACGTCGCTTAATATTGCGTAGGAGCTGGAACTGCCGAAGACGGATTCACCTGAGTTGGTGAAGTCGAAGGT > 1:1152554/1‑90 TCCGGGCGGAGAGGGTTAACGTCGCTTAATATTGCGTAGGAGCTGGAACTGCCGAAGACGGATTCACCTGAGTTGGTGAAGTCGAAGGTA > 2:1466829/1‑90 TCCGGGCGGAGAGGGTTAACGTCGCTTAATATTGCGTAGGAGCTGGAACTGCCGAAGACGGATTCACCTGAGTTGGTGA > 2:62400/1‑79 TCCGGGCGGAGAGGGTTAACGTCGCTTAATATTGCGTAGGAGCTGGAACTGCCGAAGACGGATTCACCTGAGTTGGTGA < 1:62400/79‑1 GGCGCAACGACTACCGTACCTTCGACTTCACCAACTCAGGTGAATCCGTCTTCGGCAGTTCCAGCTCCTACGCAATATTAAGCGACGTTAACCCTCTCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP009273/471327‑471426‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taaccctctccgGGCGGAGAGGGTTAACGTCGCTTAATATTGCGTAGGAGCTGGAACTGCCGAAGACGGATTCACCTGAGTTGGTGAAGTCGAAGGTA < NZ_CP009273/471428‑471343 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |