New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NZ_CP009273 278994 =85 (1.580)5 (0.100) 4/152 3.9 5.3% coding (83/1968 nt) yagF xylonate dehydratase YagF
?NZ_CP009273 279036 = 103 (2.120)coding (125/1968 nt) yagF xylonate dehydratase YagF
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 120 total aligned reads displayed.

CGCGTTTTATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCAAAGAGGTGCTGATTATCGGCACTCAGGGCG  >  NZ_CP009273/278947‑279125
                                                                                         |                                                                                         
cgcgTTTTATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCaa                                                                                           <  1:700292/90‑1 (MQ=255)
cgcgTTTTATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCaa                                                                                           <  2:769084/90‑1 (MQ=255)
 gcgTTTTATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAAc                                                                                          >  1:850154/1‑90 (MQ=255)
  cgTTTTATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAAcc                                                                                         <  1:332667/90‑1 (MQ=255)
  cgTTTTATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAAcc                                                                                         <  2:705072/90‑1 (MQ=255)
    ttttATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTTACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAAcccg                                                                                       >  1:1064269/1‑88 (MQ=255)
     tttATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGt                                                                                      <  1:436083/90‑1 (MQ=255)
            ggTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCAt                                                                               <  1:726732/90‑1 (MQ=255)
            ggTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCAt                                                                               >  2:1506788/1‑90 (MQ=255)
            ggTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCAt                                                                               <  2:293003/90‑1 (MQ=255)
             gTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGc                                                                                 <  2:779338/87‑1 (MQ=255)
             gTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGc                                                                                 >  1:779338/1‑87 (MQ=255)
              tGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGa                                                                             >  2:515784/1‑90 (MQ=255)
               gATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGAc                                                                            >  1:986309/1‑90 (MQ=255)
                  cACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCa                                                                         >  1:407934/1‑90 (MQ=255)
                  cACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCa                                                                         <  1:1506788/90‑1 (MQ=255)
                       aCGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACg                                                                    >  2:444419/1‑90 (MQ=255)
                       aCGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACg                                                                    >  2:1380618/1‑90 (MQ=255)
                       aCGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACg                                                                    >  2:255854/1‑90 (MQ=255)
                        atctgcggGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGc                                                                   >  1:416508/5‑90 (MQ=255)
                        atctgcggGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGc                                                                   >  2:1405138/5‑90 (MQ=255)
                         gcggcgGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGcc                                                                  <  1:901670/90‑1 (MQ=255)
                           ggcggGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCgg                                                                >  1:94516/1‑90 (MQ=255)
                             cggGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGa                                                              <  1:1166275/90‑1 (MQ=255)
                             cggGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGa                                                              <  2:353188/90‑1 (MQ=255)
                             cggGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGa                                                              <  2:1349508/90‑1 (MQ=255)
                              ggggCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGa                                                              >  2:429492/1‑89 (MQ=255)
                              ggggCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGa                                                              <  1:429492/89‑1 (MQ=255)
                              ggggCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGAt                                                             >  1:749101/1‑90 (MQ=255)
                              ggggCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGAt                                                             <  1:444419/90‑1 (MQ=255)
                              ggggCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGAt                                                             <  2:700969/90‑1 (MQ=255)
                              ggggCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGAt                                                             >  1:1476065/1‑90 (MQ=255)
                                ggCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATgg                                                           <  1:843175/90‑1 (MQ=255)
                                         gcgcTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGa                                                              >  2:1437782/1‑78 (MQ=255)
                                         gcgcTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGa                                                              <  1:1437782/78‑1 (MQ=255)
                                            ggttGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCca                                               >  1:849826/4‑90 (MQ=255)
                                              ctGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGa                                                              <  2:626460/73‑1 (MQ=255)
                                              ctGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGa                                                              >  1:626460/1‑73 (MQ=255)
                                                   gCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCTAACAAGCt                                        >  1:321007/1‑90 (MQ=255)
                                                   gCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCt                                        >  1:875272/1‑90 (MQ=255)
                                                    cTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGGCGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTc                                       <  2:655496/90‑1 (MQ=255)
                                                    cTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTc                                       <  2:850154/90‑1 (MQ=255)
                                                    cTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTc                                       <  1:1369124/90‑1 (MQ=255)
                                                     tGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCa                                      >  1:238349/1‑90 (MQ=255)
                                                      gACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCAc                                     <  2:611629/90‑1 (MQ=255)
                                                      gACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCAc                                     <  2:1858/90‑1 (MQ=255)
                                                       aCCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCAcc                                    <  1:350353/90‑1 (MQ=255)
                                                       aCCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCAcc                                    <  1:746377/90‑1 (MQ=255)
                                                       aCCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCAcc                                    <  2:426909/90‑1 (MQ=255)
                                                          ccGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGAt                                                             <  1:143832/62‑1 (MQ=255)
                                                          ccGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGAt                                                             >  2:143832/1‑62 (MQ=255)
                                                          ccGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTc                                       <  1:437327/84‑1 (MQ=255)
                                                          ccGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGc                                 >  1:79290/1‑90 (MQ=255)
                                                          ccGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGc                                 >  1:1447272/1‑90 (MQ=255)
                                                          ccGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGc                                 >  2:1448746/1‑90 (MQ=255)
                                                          ccGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGc                                 >  2:316973/1‑90 (MQ=255)
                                                           cGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCa                                >  1:1121947/1‑90 (MQ=255)
                                                            gCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGaa                                                                      <  2:216798/51‑1 (MQ=255)
                                                            gCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGaa                                                                      >  1:216798/1‑51 (MQ=255)
                                                            gCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCaa                               <  1:952430/90‑1 (MQ=255)
                                                               gATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCAAaga                            <  2:181296/90‑1 (MQ=255)
                                                               gATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCAAaga                            <  2:1124743/90‑1 (MQ=255)
                                                                aTGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTg                                                       <  2:441979/62‑1 (MQ=255)
                                                                aTGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCAAagag                           >  1:656535/1‑90 (MQ=255)
                                                                aTGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCAAagag                           >  2:839940/1‑90 (MQ=255)
                                                                 tGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCcaacaa                                           >  1:107923/1‑73 (MQ=255)
                                                                  gCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCAAAGAGGt                         >  2:1159634/1‑90 (MQ=255)
                                                                  gCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCAAAGAGGt                         <  2:1363329/90‑1 (MQ=255)
                                                                    tGATGGAATCTCCCAGCGGCACCCTGTTCGGTATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCAAAGAGGTGc                       <  1:1096512/90‑1 (MQ=255)
                                                                    tGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCAAAGAGGTGc                       <  2:80610/90‑1 (MQ=255)
                                                                    tGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCAAAGAGGTGc                       <  1:105570/90‑1 (MQ=255)
                                                                    tGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCAAAGAGGTGc                       <  1:1159634/90‑1 (MQ=255)
                                                                    tGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCAAAGAGGTGc                       <  1:1119659/90‑1 (MQ=255)
                                                                    tGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCAAAGAGGTGc                       <  2:106297/90‑1 (MQ=255)
                                                                    tGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCAAAGAGGTGc                       <  1:742464/90‑1 (MQ=255)
                                                                     gATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCAAAGAGGTGCt                      >  1:1118384/1‑90 (MQ=255)
                                                                     gATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCAAAGAGGTGCt                      <  2:457167/90‑1 (MQ=255)
                                                                         gAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCaa                               >  2:686845/1‑77 (MQ=255)
                                                                         gAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCaa                               <  1:686845/77‑1 (MQ=255)
                                                                         gAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCAAAGAGGTGCTGAtt                  <  2:154146/90‑1 (MQ=255)
                                                                         gAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCAAAGAGGTGCTGAtt                  <  2:1068841/90‑1 (MQ=255)
                                                                           aTCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCAAAGAGGTGCTGATTAt                >  1:450801/1‑90 (MQ=255)
                                                                            tctcCCAGCGGCAACCTGTTCGGCATGACGCAGAACGTCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCAAAGAGGTGCTGATTATc               <  2:800030/90‑1 (MQ=255)
                                                                             ctcCCAGCGGCAACCTGTTCGGCATGACGCAGAACGc                                                                   <  2:1319124/37‑1 (MQ=255)
                                                                             ctcCCAGCGGCAACCTGTTCGGCATGACGCAGAACGc                                                                   >  1:1319124/1‑37 (MQ=255)
                                                                             ctcCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCAAAGAGGTGCTGATTATCg              >  1:597144/1‑90 (MQ=255)
                                                                             ctcCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCAAAGAGGTGCTGATTATCg              >  1:334394/1‑90 (MQ=255)
                                                                                 cAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCAAAGAGGTGCTGATTATCGGCAc          >  2:396196/1‑90 (MQ=255)
                                                                                   gCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGc                                         <  1:664649/57‑1 (MQ=255)
                                                                                   gCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGc                                         >  2:664649/1‑57 (MQ=255)
                                                                                   gCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCAAAGAGGTGCTGATTATCGGCACTc        <  1:1562942/90‑1 (MQ=255)
                                                                                    cGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCAAAGAGGTGCTGATTATCGGCACTCa       <  2:916226/90‑1 (MQ=255)
                                                                                    cGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCAAAGAGGTGCTGATTATCGGCACTCa       <  2:656535/90‑1 (MQ=255)
                                                                                    cGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCAAAGAGGTGCTGATTATCGGCACTCa       <  1:607994/90‑1 (MQ=255)
                                                                                    cGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCAAAGAGGTGCTGATTATCGGCACTCa       <  2:1327102/90‑1 (MQ=255)
                                                                                       cAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCAAAGAGGTGCTGAtt                  <  2:1240797/76‑1 (MQ=255)
                                                                                       cAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCAAAGAGGTGCTGATTATCGGCACTCAggg    >  2:531790/1‑90 (MQ=255)
                                                                                        aaCCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTc                                       <  1:1345757/54‑1 (MQ=255)
                                                                                        aaCCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTc                                       >  2:1345757/1‑54 (MQ=255)
                                                                                         aCCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCAAAGAGGGGCTGATTATCGGCACTCAGggcg  >  1:1033677/1‑90 (MQ=255)
                                                                                         |                                                                                         
CGCGTTTTATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCGGCAACCTGTTCGGCATGACGCAGAACGCCGGGATGGGCTGGGACGCCAACAAGCTCACCGGCAAAGAGGTGCTGATTATCGGCACTCAGGGCG  >  NZ_CP009273/278947‑279125

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.