| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 2886946 | 23 (0.430) | 4 (0.080) | 4/154 | 3.7 | 11.9% | coding (931/1272 nt) | ygcN | FAD‑dependent oxidoreductase |
| ? | NZ_CP009273 | = 2886968 | 38 (0.770) | coding (953/1272 nt) | ygcN | FAD‑dependent oxidoreductase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CTGGCTGCTGGTGGGCGATGCGTTGCGCAGTTGCGTCAATACCGGAATTTCCGTGCGCGGCATGGATATGGCGCTGACTGGCGCGCAGGCGGCGGCACAAACGCTGATAAGCGCCTGCCAGCACCGCGAGCCGCAAAATCTGTTTCCGCTTTATCATCACAACGTAGAG > NZ_CP009273/2886888‑2887056 | ctggctgCTGGTGGGCGATGCGTTTCGCAGTTGCGTCAATACCGGAATTTCCGTGCGCGGCATGGATATGGCGCTGACTGGCGCGCAggc > 2:7758/1‑90 (MQ=255)ctggctgCTGGTGGGCGATGCGTTGCGCAGTTGCGTCAATACCGGAATTTCCGTGCGCGGCATGGATATGGCGCTGACTGGCGCGCAggc > 1:552681/1‑90 (MQ=255) tggGCGATGCGTTGCGCAGTTGCGTCAATACCGGAATTTCCGTGCGCGGCATGGATATGGCGCTGACTGGCGCGCAGGCGGCGGCACaaa < 2:976308/90‑1 (MQ=255) gggCGATGCGTTGCGCAGTTGCGTCAATACCGGAATTTCCGTGCGCGGCATGGATATGGCGCTGACTGGCGCGCacg < 2:954536/77‑3 (MQ=255) gggCGATGCGTTGCGCAGTTGCGTCAATACCGGAATTTCCGTGCGCGGCATGGATATGGCGCTGACTGGCGCGCacg > 1:954536/1‑75 (MQ=255) gggCGATGCGTTGCGCAGTTGCGTCAATACCGGAATTTCCGTGCGCGGCATGGATATGGCGCTGACTGGCGCGCAGGCGGCGGCACAAAc > 2:1058398/1‑90 (MQ=255) gCGATGCGTTGCGCAGTTGCGTCAATACCGGAATTTCCGTGCGCGGCATGGATATGGCGCTGACTGGCGCGCAGGCGGCGGCACAAACGc < 1:1594936/90‑1 (MQ=255) gCGTTGCGCAGTTGCGTCAATACCGGAATTTCCGTGCGCGGCATGGATATGGCGCTGACTGGCGCGCAGGCGGCGGCACAAACGCTGATa < 2:82197/90‑1 (MQ=255) gCGTTGCGCAGTTGCGTCAATACCGGAATTTCCGTGCGCGGCATGGATATGGCGCTGACTGGCGCGCAGGCGGCGGCACAAACGCTGATa > 1:875771/1‑90 (MQ=255) gTTGCGTCAATACCGGAATTTCCGTGCGCGGCATGGATATGGCGCTGACTGGCGCGCAGGCGGCGGCACAAACGCTGATAAGCGCCTGcc > 1:437064/1‑90 (MQ=255) gTCAATACCGGAATTTCCGTGCGCGGCATGGATATGGCGCTGACTGGCGCGCAGGCGGCGGCACAAACGCTGATAAGCGCCTGCCATCAc > 2:756333/1‑90 (MQ=255) tACCGGAATTTCCGTGCGCGGCATGGATATGGCGCTGACTGGCGCGCAGGCGGCGGCACAAACGCTGATAAGCGCCTGCCAGCACCGCGa > 2:1561599/1‑90 (MQ=255) tACCGGAATTTCCGTGCGCGGCATGGATATGGCGCTGACTGGCGCGCAGGCGGCGGCACAAACGCTGATAAGCGCCTGCCAGCACCGCGa > 2:37188/1‑90 (MQ=255) ccGGAATTTCCGTGCGCGGCATGGATATGGCGCTGACTGGCGCGCAGGCGGCGGCACAAACGCTGATAAGCGCCTGCCAGCACCGCGAGc > 2:63915/1‑90 (MQ=255) cGGAATTTCCGTGCGCGGCATGGATATGGCGCTGACTGGCGCGCAGGCGGCGGCACAAACGCTGATAAGCGCCTGCCAGCACCGCGAGcc < 2:794165/90‑1 (MQ=255) ccGTGCGCGGCATGGATATGGCGCTGACTGGCGCGCAGGCGGCGGCACAAACGCTGATAAGCGCCTGCCAGCACCGCGAGCCGCAAAATc < 2:481326/90‑1 (MQ=255) cGTGCGCGGCATGGATATGGCGCTGACTGGCGCGCAGGCGGCGGCACAAACGCTGATAAGCGCCTGCCAGCACCGCGAGCCGCAAAATCt > 2:147032/1‑90 (MQ=255) gCATGGATATGGCGCTGACTGGCGCGCAGGCGGCGGCACAAACGCTGATAAGCGCCTGCCAGCACCGCGAGc > 2:118768/1‑72 (MQ=255) gCATGGATATGGCGCTGACTGGCGCGCAGGCGGCGGCACAAACGCTGATAAGCGCCTGCCAGCACCGCGAGc < 1:118768/72‑1 (MQ=255) gCATGGATATGGCGCTGACTGGCGCGCAGGCGGCGGCACAAACGCTGATAAGCGCCTGCCAGCACCGCGAGCCGCAAAATCTGTTTCCGc > 1:1521644/1‑90 (MQ=255) cATGGATATGGCGCTGACTGGGGCGCGGGGGGCGGCCAAAACGCTGATAAGCCCCTCCCAGCACCGCGAGCCGCAAAATCTGTTTCCGCt < 1:390601/90‑1 (MQ=255) cATGGATATGGCGCTGACTGGCGCGCAGGCGGCGGCACAAACGCTGATAAGCGCCTGCCAGCACCGCGAGCCGCAAAATCTGTTTCCGCt < 2:1229976/90‑1 (MQ=255) gATATGGCGCTGACTGGCGCGCAGGCGGCGGCACAAACGCTGATAAGCGCCTGCCAGCACCGCGAGCCGCAAAATCTGTTTCCGCTTTat > 2:516257/1‑90 (MQ=255) atatGGCGCTGACTGGCGCGCAGGCGGCGGCACAAACGCTGATAAGCGCCTGCCAGCCCCGCGAGCCGCAAAATCTGTTTCCGCTTTatc < 1:374956/90‑1 (MQ=255) atatGGCGCTGACTGGCGCGCAGGCGGCGGCACAAACGCTGATAAGCGCCTGCCAGCACCGCGAGCCGCAAAATCTGTTTCCGCTTTatc < 2:875771/90‑1 (MQ=255) atGGCGCTGCCTGGGGCGAGGGCGGCGGCACAAACGCTGATAAGGGCCTGCCAGCACCGCGAGCCGCAAAATCTGTTTCCGCTTTatcat < 2:1490800/90‑1 (MQ=255) atGGCGCTGACTGGCGCGCAGGCGGCGGCACAAACGCTGATAAGCGCCTGCCAGCACCGCGAGCCGCAAAATCTGTTTCCGCt < 1:1193082/83‑1 (MQ=255) atGGCGCTGACTGGCGCGCAGGCGGCGGCACAAACGCTGATAAGCGCCTGCCAGCACCGCGAGCCGCAAAATCTGTTTCCGCt > 2:1193082/1‑83 (MQ=255) ggCGCTGACTGGCGCGCAGGCGGCGGCACAAACGc > 1:693741/1‑35 (MQ=255) ggCGCTGACTGGCGCGCAGGCGGCGGCACAAACGc < 2:693741/35‑1 (MQ=255) ggCGCTGACTGGCGCGCAGGCGGCGGCACAAACGCTGATAAGCGCCTGCCAGCACCGCGAGCCGCAAAATCTGTTTCCGCTTTatcat > 2:328400/1‑88 (MQ=255) ggCGCTGACTGGCGCGCAGGCGGCGGCACAAACGCTGATAAGCGCCTGCCAGCACCGCGAGCCGCAAAATCTGTTTCCGCTTTatcat < 1:328400/88‑1 (MQ=255) ggCGCTGACTGGCGCGCAGGCGGCGGCACAAACGCTGATAAGCGCCTGCCAGCACCGCGAGCCGCAAAATCTGTTTCCGCTTTAtcatca > 2:789398/1‑90 (MQ=255) gcgcTGACTGGCGCGCAGGCGGCGGCACAAACGCTGATAAGCGCCTGCCAGCACCGCGAGCCGCAAAATCTGTTTCCGCTTTATCATcac > 2:1606659/1‑90 (MQ=255) gcTGACTGGCGCGCAGGCGGCGGCACAAACGCTGATAAGCGCCTGCCAGCACCGCGAGCCGCAAAATCTGTTTCCGCTTTATCATCACaa > 2:1596550/1‑90 (MQ=255) cTGACTGGCGCGCAGGCGGCGGCACAAACGCTGATAAGCGCCTGCCAGCACCGCGAGCCGCAAAATCTGTTTCCGCTTTATCATCACAAc > 2:67724/1‑90 (MQ=255) cTGACTGGCGCGCAGGCGGCGGCACAAACGCTGATAAGCGCCTGCCAGCACCGCGAGCCGCAAAATCTGTTTCCGCTTTATCATCACAAc > 1:938427/1‑90 (MQ=255) tGACTGGCGCGCAGGCGGCGGCACAAACGCTGATAAGCGCCTGCCAGCACCGCGAGCCGCAAAATCTGTTTCCGCTTTATCATCACAACg > 2:781572/1‑90 (MQ=255) ggCGCGCAGGCGGCGGCACAAACGCTGATAAGCGCCTGCCAGCACCGCGAGCCGCAAAATCTGTTTCCGCTTTATCATCACAACGTagag > 2:858725/1‑90 (MQ=255) ggCGCGCAGGCGGCGGCACAAACGCTGAAAAGCCCCTGCCAGCCCCGCGAGCCGCAAAATCTGTTTCCGCTTTATCATCACAACGTagag < 1:847907/90‑1 (MQ=255) | CTGGCTGCTGGTGGGCGATGCGTTGCGCAGTTGCGTCAATACCGGAATTTCCGTGCGCGGCATGGATATGGCGCTGACTGGCGCGCAGGCGGCGGCACAAACGCTGATAAGCGCCTGCCAGCACCGCGAGCCGCAAAATCTGTTTCCGCTTTATCATCACAACGTAGAG > NZ_CP009273/2886888‑2887056 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |