| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 4306900 = | 51 (0.960) | 3 (0.060) | 3/150 | 4.0 | 5.4% | coding (136/1137 nt) | phnM | alpha‑D‑ribose 1‑methylphosphonate 5‑triphosphate diphosphatase |
| ? | NZ_CP009273 | 4306937 = | 60 (1.250) | coding (99/1137 nt) | phnM | alpha‑D‑ribose 1‑methylphosphonate 5‑triphosphate diphosphatase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AGAATTTATCCAGATTATCGGTATGCAGCTCAATCAGCCCCGGCAGCAGCCAGCCGCCTTCGCCGTCCATCGCCTCCGGCAGGCGGCTCTGGCTTTCGGCAAAGGCGCGGATTTCGCCGTTCTGCA‑‑‑CCTCCAGCGAACCGCTTACCACCTCGTTTTCCAGCACCAGCTTAACGT > NZ_CP009273/4306849‑4307022 | agaaTTTATCCAGATTATCGGTATGCAGCTCAATCAGCCCCGGCAGCAGCCAGCCGCCTTCGCCGTCCATCGCCTCCGGCAGGCGGctct < 1:1168051/90‑1 (MQ=255) tttATCCAGATTATCGGTATGCAGCTCAATCAGCCCCGGCAGCAGCCAGCCGCCTTCGCCGTCCATCGCCTCCGGCAGGCGGCTCTGGCt > 2:337984/1‑90 (MQ=255) tttATCCAGATTATCGGTATGCAGCTCAATCAGCCCCGGCAGCAGCCAGCCGCCTTCGCCGTCCATCGCCTCCGGCAGGCGGCTCTGGCt > 1:456799/1‑90 (MQ=255) tttATCCAGATTATCGGTATGCAGCTCAATCAGCCCCGGCAGCAGCCAGCCGCCTTCGCCGTCCATCGACTCCGGCAGGCGGCTCTGGCt > 2:968047/1‑90 (MQ=255) tATCCAGATTATCGGTATGCAGCTCAATCAGCCCCGGCAGCAGCCAGCCGCCTTCGCCGTCCATCGCCTCCGGCAGGCGGCTCTGGCttt > 2:378993/1‑90 (MQ=255) tATCCAGATTATCGGTATGCAGCTCAATCAGCCCCGGCAGCAGCCAGCCGCCTTCGCCGTCCATCGCCTCCGGCAGGCGGCTCTGGCttt > 2:318058/1‑90 (MQ=255) tCCAGATTATCGGTATGCAGCTCAATCAGCCCCGGCAGCAGCCAGCCGCCTTCGCCGTCCATCGCCTCCGGCAGGCGGCTCTGGCTTTCg > 1:425250/1‑90 (MQ=255) aGATTATCGGTATGCAGCTCAATCAGCCCCGGCAGCAGCCAGCCGCCTTCGCCGTCCATCGCCTCCGGCAGGCGGCTCTGGCTTTCGGCa > 1:1132049/1‑90 (MQ=255) aGATTATCGGTATGCAGCTCAATCAGCCCCGGCAGCAGCCAGCCGCCTTCGCCGTCCATCGCCTCCGGCAGGCGGCTCTGGCTTTCGGCa > 2:703457/1‑90 (MQ=255) aGATTATCGGTATGCAACTCAATCAGCCCCGGCAGCAGCCAGCCGCCTTCGCCGTCCATCGCCTCCGGCAGGCGGCTCTGGCTTTCGGCa > 1:1237346/1‑90 (MQ=255) aTTATCGGTATGCAGCTCAATCAGCCCCGGCAGCAGCCAGCCGCCTTCGCCGTCCATCGCCTCCGGCAGGCGGCTCTGGCTTTCGGCaaa > 2:1144478/1‑90 (MQ=255) aTTATCGGTATGCAGCTCAATCAGCCCCGGCAGCAGCCAGCCGCCTTCGCCGTCCATCGCCTCCGGCAGGCGGCTCTGGCTTTCGGCaaa < 2:275347/90‑1 (MQ=255) aTTATCGGTATGCAGCTCAATCAGCCCCGGCAGCAGCCAGCCGCCTTCGCCGTCCATCGCCTCCGGCAAGCGGCTCTGGCTTTCGGCaaa > 2:71349/1‑90 (MQ=255) cGGTATGCAGCTCAATCAGCCCCGGCAGCAGCCAGCCGCCTTCGCCGTCCATCGCCTCCGGCAGGCGGCTCTGGCTTTCGGCAAAGgcgc < 2:820632/90‑1 (MQ=255) aTGCAGCTCAATCAGCCCCGGCAGCAGCCAGCCGCCTTCGCCGTCCATCGCCTCCGGCAGGCGGCTCTGGCTTTCGGCAAAGGCGCGGAt > 1:1378470/1‑90 (MQ=255) aTGCAGCTCAATCAGCCCCGGCAGCAGCCAGCCGCCTTCGCCGTCCATCGCCTCCGGCAGGCGGCTCTGGCTTTCGGCAAAGGCGCGGAt > 2:11687/1‑90 (MQ=255) aTGCAGCTCAATCAGCCCCGGCAGCAGCCAGCCGCCTTCGCCGTCCATCGCCTCCGGCAGGCGGCTCTGGCTTTCGGCAAAGGCGCGGAt > 2:1525253/1‑90 (MQ=255) gCAGCTCAATCAGCCCCGGCAGCAGCCAGCCGCCTTCGCCGTCCATCGCCTCCGGCAGGCGGCTCTGGCTTTCGGCAAAGGCGCGGAttt > 1:1118218/1‑90 (MQ=255) aGCTCAATCAGCCCCGGCAGCAGCCAGCCGCCTTCGCCGTCCATCGCCTCCGGCAGGCGGCTCTGGCTTTCGGCAAAGGCGCGGATTTCg > 2:387688/1‑90 (MQ=255) aGCTCAATCAGCCCCGGCAGCAGCCAGCCGCCTTCGCCGTCCATCGCCTCCGGCAGGCGGCTCTGGCTTTCGGCAAAGGCGCGGATTTCg > 2:245792/1‑90 (MQ=255) aGCTCAATCAGCCCCGGCAGCAGCCAGCCGCCTTCGCCGTCCATCGCCTCCGGCAGGCGGCTCTGGCTTTCGGCAAAGGCGCGGATTTCg > 2:1585299/1‑90 (MQ=255) gCTCAATCAGCCCCGGCAGCAGCCAGCCGCCTTCGCCGTCCATCGCCTCCGGCAGGCGGCTCTGGCTTTCGGCAAAGGCGCGGATTTCGc > 1:11801/1‑90 (MQ=255) gCTCAATCAGCCCCGGCAGCAGCCAGCCGCCTTCGCCGTCCATCGCCTCCGGCAGGCGGCTCTGGCTTTCGGCAAAGGCGCGGATTTCGc > 2:552290/1‑90 (MQ=255) cAATCAGCCCCGGCAGCAGCCAGCCGCCTTCGCCGTCCATCGCCTCCGGCAGGCGGCTCTGGCTTTCGGCAAAGGCGCGGATTTc > 2:1402638/1‑85 (MQ=255) cAATCAGCCCCGGCAGCAGCCAGCCGCCTTCGCCGTCCATCGCCTCCGGCAGGCGGCTCTGGCTTTCGGCAAAGGCGCGGATTTc < 1:1402638/85‑1 (MQ=255) cAATCAGCCCCGGCAGCAGCCAGCCGCCTTCGCCGTCCATCGCCTCCGGCAGGCGGCTCTGGCTTTCGGCAAAGGCGCGGATTTCGCCGt > 1:1170239/1‑90 (MQ=255) cAATCAGCCCCGGCAGCAGCCAGCCGCCTTCGCCGTCCATCGCCTCCGGCAGGCGGCTCTGGCTTTCGGCAAAGGCGCGGATTTCGCCGt < 1:318058/90‑1 (MQ=255) cAATCAGCCCCGGCAGCAGCCAGCCGCCTTCGCCGTCCATCGCCTCCGGCAGGCGGCTCTGGCTTTCGGCAAAGGCGCGGATTTCGCCGt > 2:850382/1‑90 (MQ=255) cAATCAGCCCCGGCAGCAGCCAGCCGCCTTCGCCGTCCATCGACTCCGGCAGGCGGCTCTGGCTTTCGGCAAAGGCGCGGATTTCGCCGt < 1:968047/90‑1 (MQ=255) ccccGGCAGCAGCCAGCCGCCTTCGCCGTCCATCGCCTCCGGCAGGCGGCTCTGGCTTTCGGCAAAGGCGCGGATTTCGCCGTTCTGCA‑‑‑c > 2:1279926/1‑90 (MQ=255) cccGGCAGCAGCCAGCCGCCTTCGCCGTCCATCGCCTCCGGCAGGCGGCTCTGGCTTTCGGCAAAGGCGCGGATTTCGCCGTTCTGCA‑‑‑cc < 2:1502431/90‑1 (MQ=255) cGGCAGCAGCCAGCCGCCTTCGCCGTCCATCGCCTCCGGCAGGCGGCTCTGGCTTTCGGCAAAGGCGCGGATTTCGCCGTTCTGCA‑‑‑CCTc > 2:1071202/1‑90 (MQ=255) cagccagcCGCCTTCGCCGTCCATCGCCTCCGGCAGGCGGCTCTGGCTTTCGGCAAAGGCGCGGATTTCGCCGTTCTGCA‑‑‑CCTCCAGCGa < 1:1279926/90‑1 (MQ=255) ccagccGCCTTCGCCGTCCATCGCCTCCGGCAGGCGGCTCTGGCTTTCGGCAAAGGCGCGGATTTCGCCGTTCTGCA‑‑‑CCTCCAGCGAAcc < 2:227127/90‑1 (MQ=255) gagccGCCTTCGCCGTCCATCGCCTCCGGCAGGCGGCTCTGGCTTTCGGCAAAGGCGCGGATTTCGCCGTTCTGCA‑‑‑CCTCCAGCGAACCg > 2:637559/2‑90 (MQ=255) agccGCCTTCGCCGTCCATCGCCTCCGGCAGGCGGCTCTGGCTTTCGGCAAAGGCGCGGATTTCGCCGTTCTGCA‑‑‑CCTCCAGCGAACCGc > 2:529735/1‑90 (MQ=255) gccgccTTCGCCGTCCATCGCCTCCGGCAGGCGGCTCTGGCTTTCGGCAAAGGCGCGGATTTCGCCGTTCTTCA‑‑‑CCTCCAGCGAACCGCt > 2:792177/1‑90 (MQ=255) gccgccTTCGCCGTCCATCGCCTCCGGCAGGCGGCTCTGGCTTTCGGCAAAGGCGCGGATTTCGCCGTTCTGCA‑‑‑CCTCCAGCGa < 2:629433/84‑1 (MQ=255) gccgccTTCGCCGTCCATCGCCTCCGGCAGGCGGCTCTGGCTTTCGGCAAAGGCGCGGATTTCGCCGTTCTGCA‑‑‑CCTCCAGCGa > 1:629433/1‑84 (MQ=255) gccgccTTCGCCGTCCATCGCCTCCGGCAGGCGGCTCTGGCTTTCGGCAAAGGCGCGGATTTCGCCGTTCTGCA‑‑‑CCTCCAGCGAACCGCt > 1:816903/1‑90 (MQ=255) cgccTTCGCCGTCCATCGCCTCCGGCAGGCGGCTCTGGCTTTCGGCAAAGGCGCGGATTTCGCCGTTCTGCA‑‑‑CCTCCAGCGAACCGCTTa > 2:1318861/1‑90 (MQ=255) cGTCCATCGCCTCCGGCAGGCGGCTCTGGCTTTCGGCAAAGGCGCGGATTTCGCCGTTCTGCA‑‑‑CCTCCAGCGAACCGCTTACCACCTCGt < 1:1355481/90‑1 (MQ=255) cGTCCATCGCCTCCGGCAGGCGGCTCTGGCTTTCGGCAAAGGCGCGGATTTCGCCGTTCTGCA‑‑‑CCTCCAGCGAACCGCTTACCACCTCGt < 1:1525253/90‑1 (MQ=255) cGTCCATCGCCTCCGGCAGGCGGCTCTGGCTTTCGGCAAAGGCGCGGATTTCGCCGTTCTGCA‑‑‑CCTCCAGCGAACCGCTTACCACCTCGt < 1:11687/90‑1 (MQ=255) gTCCATCGCCTCCGGCAGGCGGCTCTGGCTTTCGGCAAAGGCGCGGATTTCGCCGTTCTGCA‑‑‑CCTCCAGCGAACCGCTTACCACCTCGtt > 1:342505/1‑90 (MQ=255) aTCGCCTCCGGCAGGCGGCTCTGGCTTTCGGCAAAGGCGCGGATTTCGCCGTTCTGCA‑‑‑CCTCCAGCGAACCGCTTACCACCTCGTTTTcc < 1:822872/90‑1 (MQ=255) cTCCGGCAGGCGGCTCTGGCTTTCGGCAAAGGCGCGGATTTCGCCGTTCTGCA‑‑‑CCTCCAGCGAACCGCTTACCACCTCGTTTTCCAGCAc < 1:1496427/90‑1 (MQ=255) cTCCGGCAGGCGGCTCTGGCTTTCGGCAAAGGCGCGGATTTCGCCGTTCTGCA‑‑‑CCTCCAGCGAACCGCTTACCACCTCGTTTTCCAGCAc < 2:1194452/90‑1 (MQ=255) cTCCGGCAGGCGGCTCTGGCTTTCGGCAAAGGCGCGGATTTCGCCGTTCTGCA‑‑‑CCTCCAGCGAACCGCTTACCACCTCGTTTTCCAGCAc < 2:1378470/90‑1 (MQ=255) cTCCGGCAGGCGGCCCTGGCTTTCGGCAAAGGCGCGGATTTCGCCGTTCTGAA‑‑‑CCTCCAGCGAACCGCTTACCCCCTCGTTTTCCAGCAc < 1:1227200/90‑1 (MQ=255) tCCGGCAGGCGGCTCTGGCTTTCGGCAAAGGCGCGGATTTCGCCGTTCTGCA‑‑‑CCTCCAGCGAACCGCTTACCACCTCGTTTTCCAGCAcc > 1:265624/1‑90 (MQ=255) tCCGGCAGGCGGCTCTGGCTTTCGGCAAAGGCGCGGATTTCGCCGTTCTGCA‑‑‑CCTCCAGCGAACCGCTTACCACCTCGTTTTCCAGCAcc < 1:964415/90‑1 (MQ=255) tCCGGCAGGCGGCTCTGGCTTTCGGCAAAGGCGCGGATTTCGCCGTTCTGCA‑‑‑CCTCCAGCGAACCGCTTACCACCTCGTTTTCCAGCAcc < 2:816903/90‑1 (MQ=255) tCCGGCAGGCGGCTCTGGCTTTCGGCAAAGGCGCGGATTTCGCCGTTCTGCA‑‑‑CCTCCAGCGAACCGCTTACCACCTCGTTTTCCAGCAcc < 1:1157270/90‑1 (MQ=255) tCCGGCAGGCGGCTCTGGCTTTCGGCAAAGGCGCGGATTTCGCCGTTCTGCA‑‑‑CCTCCAGCGAACCGCTTACCACCTCGTTTTCCAGCAcc < 1:665480/90‑1 (MQ=255) tCCGGCAGGCGGCTCTGGCTTTCGGCAAAGGCGCGGATTTCGCCGTTCTGCA‑‑‑CCTCCAGCGAACCGCTTACCACCTCGTTTTCCAGCAcc < 1:630610/90‑1 (MQ=255) tCCGGCAGGCGGCTCTGGCTTTCGGCAAAGGCGCGGATTTCGCCGTTCTGCA‑‑‑CCTCCAGCGAACCGCTTACCACCTCGTTTTCCAGCAcc < 1:1533025/90‑1 (MQ=255) tCCGGCAGGCGGCTCTGGCTTTCGGCAAAGGCGCGGATTTCGCCGTTCTGCA‑‑‑CCTCCAGCGAACCGCTTACCACCTCGTTTTCCAGCAcc > 1:1159313/1‑90 (MQ=255) tCCGGCAGGCGGCTCTGGCTTTCGGCAAAGGCGCGGATTTCGCCGTTCTGCA‑‑‑CCTCCAGCGAACCGCTTACCACCTCGTTTTCCAGCAcc < 1:593647/90‑1 (MQ=255) cGGCAGGCGGCTCTGGCTTTCGGCAAAGGCGCGGATTTCGCCGTTCTGCACCTCCTCCAGCGAACCGCTTACCACCTCGTTTTCCAGCAc < 1:186050/90‑1 (MQ=255) cAGGCGGCTCTGGCTTTCGGCAAAGGCGCGGATTTCGCCGTTCTGCA‑‑‑CCTCCAGCGAACCGCTTACCACCTCGTTTTCCAGCACCAGCtt < 2:1513255/90‑1 (MQ=255) ggcggcTCTGGCTTTCGGCAAAGGCGCGGATTTCGCCGTTCTGCA‑‑‑CCTCCAGCGAACCGCTTACCACCTCGTTTTCCAGCACCAGCTTaa > 2:640669/1‑90 (MQ=255) ggcTCTGGCTTTCGGCAAAGGCGCGGATTTCGCCGTTCTGCA‑‑‑CCTCCAGCGAACCGCTTACCACCTCGTTTTCCAGCACCAGCTTAACGt < 2:977678/90‑1 (MQ=255) ggcTCTGGCTTTCGGCAAAGGCGCGGATTTCGCCGTTCTGCA‑‑‑CCTCCAGCGAACCGCTTACCACCTCGTTTTCCAGCACCAGCTTAACGt < 2:1140603/90‑1 (MQ=255) | AGAATTTATCCAGATTATCGGTATGCAGCTCAATCAGCCCCGGCAGCAGCCAGCCGCCTTCGCCGTCCATCGCCTCCGGCAGGCGGCTCTGGCTTTCGGCAAAGGCGCGGATTTCGCCGTTCTGCA‑‑‑CCTCCAGCGAACCGCTTACCACCTCGTTTTCCAGCACCAGCTTAACGT > NZ_CP009273/4306849‑4307022 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |