| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 3628862 | 0 (0.000) | 28 (1.350) | 13/168 | 0.4 | 100% | coding (662/1053 nt) | yhiM | DUF2776 domain‑containing protein |
| ? | NZ_CP009273 | 3645396 = | NA (NA) | pseudogene (746/747 nt) | BW25113_RS18155 | hypothetical protein | |||||
TTGCTTGGGTTAACCGCAATCTGTGCCTGTCTAATTGGCCTTGTTGCCACAATTGTCCATCAAACACGTAATACGTTTTCAACTAAAGAACACTGGCTGTGGTGTTATTGGGTTATTTTTCTCGGCTCAATCACGGTACTGCAGGGGATATACGTCTTAGTCAGTTCCGATGCAA > NZ_CP009273/3628777‑3628951 | ttGCTTGGGTTAACCGCAATCTGTGCCTGTCTAATTGGCCTTGTTGCCACAATTGTCCATCAAACACGTAATACGTTTTCAACTAAggaa < 1:71899‑M1/90‑5 (MQ=255) ttGGGTTAACCGCAATCTGTGCCTGTCTAATTGGCCTTGTTGCCACAATTGTCCATCAAACACGTAATACGTTTTCAACTAAggaaggtg > 2:296726‑M1/1‑82 (MQ=255) gggTTAACCGCAATCTGTGCCTGTCTAATTGGCCTTGTTGCCACAATTGTCCATCAAACACGTAATACGTTTTCAACTAAggaaggtgcg > 1:225267‑M1/1‑80 (MQ=255) gggTTAACCGCAATCTGTGCCTGTCTAATTGGCCTTGTTGCCACAATTGTCCATCAAACACGTAATACGTTTTCAACTAAggaaggtgcg > 2:498290‑M1/1‑80 (MQ=255) aaTCTGTGCCTGTCTAATTGGCCTTGTTGCCACAATTGTCCATCAAACACGTAATACGTTTTCAACTAAggaaggtgcgaataagcgggg > 2:570121‑M1/1‑69 (MQ=255) aaTCTGTGCCTGTCTAATTGGCCTTGTTGCCACAATTGTCCATCAAACACGTAATACGTTTTCAACTAAggaaggtgcgaataagcgggg > 2:25307‑M1/1‑69 (MQ=255) gtgCCTGTCTAATTGGCCTTGTTGCCACAATTGTCCATCAAACACGTAATACGTTTTCAACTAAggaaggtgcgaataagcggggaaatt > 2:5601‑M1/1‑64 (MQ=255) gtgCCTGTCTAATTGGCCTTGTTGCCACAATTGTCCATCAAACACGTAATACGTTTTCAACTAAggaaggtgcgaataagcggggaaatt > 2:349692‑M1/1‑64 (MQ=255) tgCCTGTCTAATTGGCCTTGTTGCCACAATTGTCCATCAAACACGTAATACGTTTTCAACTAAggaaggtgcgaataagcggggaaattc > 1:583235‑M1/1‑63 (MQ=255) gCCTTGTTGCCACAATTGTCCATCAAACACGTAATACGTTTTCAACTAAggaaggtgcgaataagcggggaaattcttctcggctgactc < 2:594858‑M1/90‑42 (MQ=255) ccTTGTTGCCACAATTGTCCATCAAACACGTAATACGTTTTCAACTAAggaaggtgcgaataagcggggaaattcttctcggctgactta < 1:588062‑M1/90‑43 (MQ=255) ccTTGTTGCCACAATTGTCCATCAAACACGTAATACGTTTTCAACTAAggaaggtgcgaataagcggggaaattcttctcggctgactca > 2:381680‑M1/1‑48 (MQ=255) gttgCCACAATTGTCCATCAAACACGTAATACGTTTTCAACTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtca > 2:357335‑M1/1‑44 (MQ=255) gttgCCACAATTGTCCATCAAACACGTAATACGTTTTCAACTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtca > 1:465652‑M1/1‑44 (MQ=255) caATTGTCCATCAAACACGTAATACGTTTTCAACTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatt < 1:570121‑M1/90‑54 (MQ=255) caATTGTCCATCAAACACGTAATACGTTTTCAACTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatt < 1:138200‑M1/90‑54 (MQ=255) gTCCATCAAACACGTAATACGTTTTCAACTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttc < 2:301681‑M1/90‑59 (MQ=255) aTACGTTTTCAACTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattt > 2:105572‑M1/1‑16 (MQ=255) tttCAACTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctc > 1:534138‑M1/1‑10 (MQ=255) tttCAACTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctc > 1:354254‑M1/1‑10 (MQ=255) tAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaa < 1:49074‑M1/90‑88 (MQ=255) tAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaa < 2:413897‑M1/90‑88 (MQ=255) tAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaa < 1:217570‑M1/90‑88 (MQ=255) aaggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat < 2:327887‑M1/90‑89 (MQ=255) aaggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat < 1:543073‑M1/90‑89 (MQ=255) aaggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat < 2:544099‑M1/90‑89 (MQ=255) aaggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat > 1:343959‑M1/1‑2 (MQ=255) aggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatg > 1:18513‑M1/1‑1 (MQ=255) | TTGCTTGGGTTAACCGCAATCTGTGCCTGTCTAATTGGCCTTGTTGCCACAATTGTCCATCAAACACGTAATACGTTTTCAACTAAAGAACACTGGCTGTGGTGTTATTGGGTTATTTTTCTCGGCTCAATCACGGTACTGCAGGGGATATACGTCTTAGTCAGTTCCGATGCAA > NZ_CP009273/3628777‑3628951 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |