Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	3631605	3633664	2060	2 [1]	[0] 2	[pitA]–[uspA]	[pitA],uspB,[uspA]

GACACATCATGCACTGACCGAGCTTTCCACTAATGCAGGCTACCCAATC  >  NZ_CP009273/3633665‑3633713 |                                                 gaCACATCATGCACTGACCGAGCTTTCCACTAATGCAGGCTACCCAATc  <  1:450509/49‑1 (MQ=255) gaCACATCATGCACTGACCGAGCTTTCCACTAATGCAGGCTACCCAATc  >  2:450509/1‑49 (MQ=255) |                                                 GACACATCATGCACTGACCGAGCTTTCCACTAATGCAGGCTACCCAATC  >  NZ_CP009273/3633665‑3633713

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑