Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	3792830	3792857	28	5 [3]	[3] 4	waaZ	3‑deoxy‑D‑manno‑oct‑2‑ulosonate III transferase WaaZ

GCATTTTTTTTCTTGTCATATCTTTTGATTCTTCTGCACTGATGTCTTGAAGTTTAATAAATGGAATTACATCGTAAGAAATAGCTGTATCATCT  >  NZ_CP009273/3792740‑3792834                                                                                          |      gCATTTTTTTTCTTGTCATATCTTTTGATTCTTCTGCACTGATGTCTTGAAGTTTAATAAATGGAATTACATCGTAAGAAATAGCTGTat       >  1:862895/1‑90 (MQ=255) gCATTTTTTTTCTTGTCATATCTTTTGATTCTTCTGCACTGATGGCTTGAAGTTTAATAAATGGAATTACATCGTAAGAAATAGCTGTat       >  2:496689/1‑90 (MQ=255)   aTTTTTTTTCTTGTCATATCTTTTGATTCTTCTGCACTGATGTCTTGAAGTTTAATAAATGGAATTACATCGTAAGAAATAGCTGTatca     <  2:888694/90‑1 (MQ=255)     tttttttCTTGTCATATCTTTTGATTCTTCTGCACTGATGTCTTGAAGTTTAATAAATGGAATTACATCGTAAGAAATAGCTGTatcatc   <  1:496689/90‑1 (MQ=255)      ttttttCTTGTCATATCTTTTGATTCTTCTGCACTGATGTCTTGAAGTTTAATAAATGGAATTACATCGTAAGAAATAGCTGTATCATCt  >  2:269307/1‑90 (MQ=255)                                                                                          |      GCATTTTTTTTCTTGTCATATCTTTTGATTCTTCTGCACTGATGTCTTGAAGTTTAATAAATGGAATTACATCGTAAGAAATAGCTGTATCATCT  >  NZ_CP009273/3792740‑3792834

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑