Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NZ_CP009273 | 970,180 | 0 | C | G | 54.5% | 3.1 / 11.7 | 11 | L136V (CTC→GTC) | mukF | chromosome partition protein MukF |
Reads supporting (aligned to +/- strand): ref base C (0/5); new base G (6/0); total (6/5) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 2.16e-03 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.05e-02 | |||||||||||
Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
GACTACTACATCCGTCAGCGCGAGTTTTCTACGCTGCGTCTTTCTATGCAGTTGTCGATTGTGGCGGGTGAGCTCAAACGCGCAGCAGATGCCGCCGAAGAGGGCGGTGATGAATTTCACTGGCACCGTAATGTCTATGCGCCAC > NZ_CP009273/970108‑970252 | gACTTCTACATCCGTCAGCGCGAGTTTTCTACGCTGCGTCTTTCTATGCAGTTGTCGATTGTGGCGGGGGGGGTCCAACCCGCCGCAGag > 1:261429/1‑89 (MQ=255) cAGCGCGAGTTTTCTACGCTGCGTCTTTCTATGCAGTTGTCGATTGTGGCGGGGGGGGGCCAACACCCCGCCGAAGCCGCCCCAGAgggg > 1:360531/1‑89 (MQ=255) tGCGTCTTTCTATGCAGTTGTCGATTGTGGCGGGTGAGCTCAAACGCGCAGCAGATGCCGCCGAAGAGGGCGGTGATGAATTTCACTGGc < 2:261429/90‑1 (MQ=255) ttCTATGCAGTTGTCGATTGTGGCGGGTGAGCTCAAACGCGCAGCAGATGCCGCCGAAGAGGGCGGTGATGAATTTCACTGGCACCGTaa < 2:306762/90‑1 (MQ=255) ttCTATGCAGTTGTCGATTGTGGCGGGTGAGCTCAAACGCGCAGCAGATGCCGCCGAAGAGGGCGGTGATGAATTTCACTGGCACCGTaa < 2:741490/90‑1 (MQ=255) aTGCAGTTGTCGATTGTGGCGGGGGGGGTCAAACGCGCAGCCGATGGCGCCGGAGAGGGGGGGGGGGGATTTTTCTTGCACCGGAATGtt > 2:229144/1‑89 (MQ=255) gTTGTCGATTGTGGCGGGGGGGGTCAAAAGCGCCGCAGAAGCCGCCGGAGAGGGGGGGGGGGAATTTTACTGGGACCCCAATGTTTAttc > 2:24129/1‑88 (MQ=255) tGTCGATTGTGGCGGGTGAGCTCAAACGCGCAGCAGATGCCGCCGAAGAGGGCGGTGATGAATTTCACTGGCACCGTAATGTCTATgcgc < 1:24129/90‑1 (MQ=255) tGTCGATTGTGGCGGGGGGGGTCAAAAGCGCCGCAGAAGGCGCCGGAGAGGGGGGGGGGGGATTTTACTTGGACCCGAATGTCTATtcgc > 2:257036/1‑90 (MQ=255) tGTCGATTGTGGCGGGGGGGGTCAAAAGCGCCGCAGAAGCCGCCGAAGAGGGGGGGGGGGAATTTTACTGGCACCCCAAAGTCTATtcgc > 2:248565/1‑90 (MQ=255) cGATTGTGGCGGGTGAGCTCAAACGCGCAGCAGATGCCGCCGAAGAGGGCGGTGATGAATTTCACTGGCACCGTAATGTCTATGCGCCAc < 1:61133/90‑1 (MQ=255) | GACTACTACATCCGTCAGCGCGAGTTTTCTACGCTGCGTCTTTCTATGCAGTTGTCGATTGTGGCGGGTGAGCTCAAACGCGCAGCAGATGCCGCCGAAGAGGGCGGTGATGAATTTCACTGGCACCGTAATGTCTATGCGCCAC > NZ_CP009273/970108‑970252 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |