| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 3,401,174 | 0 | A | T | 57.1% | 6.4 / 19.9 | 21 | Y70F (TAT→TTT) | panF | sodium/pantothenate symporter |
| Reads supporting (aligned to +/- strand): ref base A (6/3); new base T (12/0); total (18/3) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.32e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.01e-03 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GGTATTGTGCTGGCGATGACGCTCACCGCGACCTATATCAGTGCCAGTTCGTTTATCGGC‑GGGCCAGGAGCTGCTTATAAATACGGGCTGGGCTGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTATTCTCGGCAAGAAGTTTGCGA > NZ_CP009273/3401098‑3401263 | ggTATTGTGCTGGCGATGACGCTCACCGCGACCTATATCAGTGCCAGTTCGTTTATCGGC‑GGGCCCGGGGGGGCTTTTTAATAAggggtg > 1:359790/1‑90 (MQ=255) tATTGTGCTGGCGATGACGCTCACCGCGACCTATATCAGTGCCAGTTCGTTTATCGGCGGGGCCGGGGGCGGTTTTTAAA‑ACgggcgggg > 1:231962/1‑90 (MQ=255) ttGTGCTGGCGATGACGCTCACCGCGACCTATATCAGTGCCAGTTCGTTTATCGGC‑GGGCCAAGAACGGGCTTTAAATACggggtggggt > 2:676449/1‑88 (MQ=255) ggCGATGACGCTCACCGCGACCTATATCAGTGCCAGTTCGTTTATCGGC‑GGGCCCGGGGGCGCTTTTAAAAACGGGCCGGGGTGGGGAtt > 1:232290/1‑90 (MQ=255) ggCGATGACGCTCACCGCGACCTATATCAGTGCCAGTTCGTTTATCGGC‑GGGCCCGGGGCGGCTTTTAAAAAAGGGgtggggtgggggtt > 1:48450/1‑86 (MQ=255) ggCGATGACGCTCACCGCGACCTATATCAGTGCCAGTTCGTTTATCGGC‑GGGCCAGGAGCTGCTTTTAAATACGGGCTGGGGTGGGGAtt > 2:208828/1‑90 (MQ=255) ggCGATGACGCTCACCGCGACCTATATCAGTGCCAGTTCGTTTATCGGC‑GGGCCAGGAGCTGCTTTTAAATACGGGCTGGGCTGGGGAtt > 2:26680/1‑90 (MQ=255) tGACGCTCACCGCGACCTATATCAGTGCCAGTTCGTTTATCGGC‑GGGGCCGGGGGTGCTTTTAAAAAAGGGGTGGGGTGGGGGTTGTTgg > 1:91425/1‑90 (MQ=255) tGACGCTCACCGCGACCTATATCAGTGCCAGTTCGTTTATCGGC‑GGGCCAGGAGCTGCTTATAAAAAAGGGGTGGGCTGGGGATTTCTgg > 2:824789/1‑90 (MQ=255) cTCACCGCGACCTATATCAGTGCCAGTTCGTTTATCGGC‑GGGCCAGGGGGTGCTTTTAAAAAAGGGGTGGGGTGGGGGTTGGTGGCgggg > 1:243112/1‑87 (MQ=255) atatCAGTGCCAGTTCGTTTATCGGC‑GGGCCAGGGGCTGCTTTTAAAAACGGGGTGGGGTGGGGATTTTTGGGGGTGGTTTAGCTTCCtt > 1:800859/1‑89 (MQ=255) aGTGCCAGTTCGTTTATCGGC‑GGGCCAGGAGCTGCTTATAAATACGGGCTGGGCTGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTc < 2:38726/90‑1 (MQ=255) gTGCCAGTTCGTTTATCGGC‑GGGGCAGGAGGTGCTTTTAAATAAGGGGTGGGGGGGGGATTTGTGGGGGTGATTTCGCTTCCTTCAGTCt > 1:497533/1‑90 (MQ=255) gTGCCAGTTCGTTTATCGGC‑GGGCCCGGAGCTGCTTATAAATAAGGGCTGGGCTGGGGATTGTTGGCGAGGATTTAACTTTCTGGAGTCt > 2:609710/1‑90 (MQ=255) gTGCCAGTTCGTTTATCGGC‑GGGCCCGGAGCTGCTTATAAAAACGGGCTGGGGTGGGGTTTTGTGGGGGGGATTCAGCTTCCTCCAGGCt > 1:771515/1‑90 (MQ=255) gTGCCAGTTCGTTTATCGGC‑GGGCCAGGAGCTGCTTATAAATACGGGCTGGGCTGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCt < 1:878224/90‑1 (MQ=255) gCCAGTTCGTTTATCGGC‑GGGCCAGGAGCTGCTTTTAAAAAAGGGGTGGGGTGGGGATTGCTGGCGGGGATTCAGCTTCCTGCAGTCTgg > 1:661678/1‑90 (MQ=255) tATCGGC‑GGGCCAGGAGCTGCTTATAAATACGGGCTGGGCTGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCgg < 2:359790/90‑1 (MQ=255) tgctTATAAATACGGGCTGGGCTGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTATTCTCGGCAAGAAGtt > 1:478370/1‑90 (MQ=255) tgctTATAAATACGGGCTGGGCTGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTATTCTCGGCAAGAAGtt > 2:720506/1‑90 (MQ=255) tgctTATAAATACGGGCTGGGCTGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTATTCTCGGCAAGAAGtt > 1:169595/1‑90 (MQ=255) ataAATACGGGCTGGGCTGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTATTCTCGGCAAGAAGTTTGCGa > 1:480971/1‑90 (MQ=255) | GGTATTGTGCTGGCGATGACGCTCACCGCGACCTATATCAGTGCCAGTTCGTTTATCGGC‑GGGCCAGGAGCTGCTTATAAATACGGGCTGGGCTGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTATTCTCGGCAAGAAGTTTGCGA > NZ_CP009273/3401098‑3401263 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |