Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NZ_CP009273 | 497,020 | 0 | A | C | 62.5% | 2.6 / 15.9 | 16 | *559E (TAA→GAA) | ybaL | Kef family K(+) transporter |
Reads supporting (aligned to +/- strand): ref base A (6/0); new base C (0/10); total (6/10) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.25e-04 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.53e-04 | |||||||||||
Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
TCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGCAACCACCGTTTACCCCGTCACCACCTCACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTACCTGATTC > NZ_CP009273/496941‑497108 | tctcGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGCAACCACCGTTTACCCCGTcacc > 2:155793/1‑90 (MQ=255) tctcGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGCAACCACCGTTTACCCCGTcacc > 2:448320/1‑90 (MQ=255) ggCGCTTCTTTTCATGCCAACTTTTTTTTCATTTTTTACTTCCGGCAACCCCCGTTTCCCCCGTCCCCACCTCCCCCGCCGGTGGCGttt < 1:295935/90‑1 (MQ=255) tttttATCTTCCCTACTTTTTTTTAATTTTTTACACCCGGCACCCCCCTTTTCCCCCGCCCCCCCCCCCCCCGCCGGTGGCGTTTCcagc < 2:42117/87‑1 (MQ=255) gTCTTATCATGCCTACATTTTTTTCATATTTTACACCCGGCAACCCCCGTTTCCCCCGTCCCCCCCTCCCCCGCCGGTGGCGTTTCcagc < 1:170369/90‑1 (MQ=255) attttATCATTCTTATATTTTTTTCTTTTTTTACATCCGGCAACCTCCTTTTCCCCCGTCCCCCCCTCCCCCGCCGGTGGCGTTTCcagc < 1:367796/87‑1 (MQ=255) tcccTACATTTTTTTCATTTTTTACATCCGGCACCCCCCGTTTCCCCCGCCCCCCCCCCCCCCGCCGGTGGCGTTTCCAGCAGTTCCAGc < 2:278064/88‑1 (MQ=255) gCCTACATATTTTTCATATTTTACATCCGGCAACCACCGTTTACCCCGTCACCACCTCACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCa > 1:241063/1‑90 (MQ=255) gCCTACATATTTTTCATATTTTACATCCGGCAACCACCGTTTACCCCGTCACCACCTCACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCa > 1:281695/1‑90 (MQ=255) ccTACATATTTTTCATTTTTCACACCCGGCACCCCCCTTTTCCCCCGCCCCCCCCCCCCCCGCCGGTGGCGTTTCCAGCAGTTCCAGCAt < 1:448320/90‑1 (MQ=255) ccTACATATTTTTAATATTTTACATCCGGCAACCCCCGTTTCCCCCGTCACCCCCCCCCCCGCCGGTGGCGTTTCCAGCAGTTCCAGCAt < 1:155793/90‑1 (MQ=255) ttttACATCCGGCAACCACCGTTTACCCCGTCACCACCTCACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCAc > 2:77788/1‑90 (MQ=255) cccGCCACCCCCCGTTTCCCCCGCCCCCCCCTCCCCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGcc < 1:277890/89‑1 (MQ=255) ccGCCACCCCCCGTTCCCCCCGCCCCCCCCCCCCCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGccc < 2:374226/90‑1 (MQ=255) cctttttCCCCCGTCCCCCCCCCCCCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTAcc < 1:571555/86‑1 (MQ=255) tACCCCGTCACCACCTCACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTACCTGATTc > 1:391877/1‑90 (MQ=255) | TCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGCAACCACCGTTTACCCCGTCACCACCTCACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTACCTGATTC > NZ_CP009273/496941‑497108 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |