| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 360104 = | NA (NA) | 62 (2.480) | 33/168 | 0.0 | NA | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
| ? | NZ_CP009273 | = 360286 | NA (NA) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
CGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTG‑CCCG‑CCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCC > NZ_CP009273/360018‑360193 | cGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAAtt > 2:363862/1‑90 (MQ=255) gCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTc > 1:145066/1‑90 (MQ=255) gCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTc > 2:444366/1‑90 (MQ=255) tGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTg > 1:514317/1‑90 (MQ=255) ccAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGc < 2:382082/90‑1 (MQ=255) gCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGt > 2:440241/1‑90 (MQ=255) caccaTCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTG‑cc < 2:187434/90‑1 (MQ=255) accaTCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTG‑ccc < 2:259417/90‑1 (MQ=255) tCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTG‑CCCG‑CCa < 2:384393/90‑1 (MQ=255) tCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTG‑CCCG‑CCa < 2:273917/90‑1 (MQ=255) gTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGGGGCCCG‑cccc‑ccccccc > 1:187286/1‑89 (MQ=255) gTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGGGGCCCG‑cccc‑ccccccc > 1:671927/1‑89 (MQ=255) gTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTcc < 1:439330/77‑1 (MQ=255) gTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTcc > 2:439330/1‑77 (MQ=255) gCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGGCCTG‑CCCC‑CCCCCCCCCCGGCCg > 2:47890/1‑90 (MQ=37) cTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTG‑CCCG‑CCACCCTCCGGGCCGt < 1:615477/90‑1 (MQ=255) tCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGGGTGCTGCCCCC‑CCCCCCCCCGGGccct > 2:521462/1‑88 (MQ=37) tCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGGGGCCTG‑CCCC‑CCCCCCCCCCGGCCgct > 2:390347/1‑88 (MQ=37) tCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGGGGCCCG‑CCCC‑CCCCCCCCCCGGcccgg > 2:331438/1‑87 (MQ=255) tCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGGCCTC‑CCCC‑CCCCCCCCCCGGCCGtt > 2:710703/1‑90 (MQ=37) gatgatAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGGGGGCTG‑CCCG‑CCCCCCCCCCGGCCGTTGCt > 2:48835/1‑90 (MQ=37) atgatAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTG‑CCCG‑CCACCCTCCGGGCCGTTGCtt < 1:520719/90‑1 (MQ=255) aaGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTG‑CCCG‑CCACCCTCCGGGCCGTTGCTTCGCaa < 1:331438/90‑1 (MQ=255) gCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGGGGCCTC‑CCCC‑CCCCCCCCCCCGCCCGTGCTTTGCCACg > 1:714157/1‑90 (MQ=255) ccGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTG‑CCCC‑CCCCCCCCCCGGCCGTTGCTTCGCAACGTTCAAAACCCCCCCccgcg > 2:60245/1‑90 (MQ=14) gATCCCCAATTCCTGGCAGTTTATGGCGGGGGTCCTG‑CCCC‑CCCCCCCCCCGGCCCTTGCTTTGCAACCTTCAAAACCCCCCCccgcggg > 2:435234/1‑89 (MQ=9) gATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTT‑CCCC‑CCCCCCCCCCGGCCGGTGCTTCCCAACGTTCAAATCCGCTCCccgccgg > 2:245015/1‑87 (MQ=14) gATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTG‑CCCC‑CCCCCCCCCCGGCCGGTGCTTTGCAACGTTCAAAACCCCCCCccgcggg > 2:104968/1‑89 (MQ=14) tCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTG‑CCCG‑CCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGAtt < 1:81476/90‑1 (MQ=255) tCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTG‑CCCG‑CCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGAtt < 1:47890/90‑1 (MQ=255) tCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTG‑CCCG‑CCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGAtt < 2:561132/90‑1 (MQ=255) tCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTG‑CCCG‑CCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGAtt < 1:426394/90‑1 (MQ=255) ccccAATTCCTGGCAGTTTATGGCGGGCGGCCTG‑CCCC‑CCCCCCCCCCGGCCGGTGCTTCCCCACGTTTAAAATCCCCCCCCGCGGGttt > 2:527910/1‑90 (MQ=9) attaaTTCCTGGCAGTTTATGGCGGGCGTCCCG‑CCCC‑CCCCCCCCCCGGGCGTTGCTTTCCAAAGTTTAAAAACCCTCCCCGCGGGtttt > 2:513208/4‑89 (MQ=2) ccAATTCCTGGCAGTTTATGGCGGGCGTCCTG‑CCCG‑CCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGt < 1:651015/90‑1 (MQ=38) ataaTTCCCGGCCGTTTTAGGGGGGCCTCCTG‑CCCGCCCCCCCCCCGGCCCGTTGCTTCGCACCGTTCAAATCCGCTCCCGG‑GGATTTGt < 1:391627/88‑1 (MQ=2) aaTTCCTGGCAGTTTATGGCGGGCGTCCTG‑CCCG‑CCCCCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 1:166421/90‑1 (MQ=25) aaTTCCTGGCAGTTTATGGCGGGCGTCCTG‑CCCG‑CCCCCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 1:693225/90‑1 (MQ=25) aaTTCCTGGCAGTTTATGGCGGGCGTCCTG‑CCCG‑CCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 2:587003/90‑1 (MQ=35) aaTTCCTGGCAGTTTATGGCGGGCGTCCTG‑CCCG‑CCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 2:84464/90‑1 (MQ=35) aaTTCCTGGCAGTTTATGGCGGGCGTCCTG‑CCCG‑CCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 2:328288/90‑1 (MQ=35) aaTTCCTGGCAGTTTATGGCGGGCGTCCTG‑CCCG‑CCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 2:359596/90‑1 (MQ=35) aaTTCCTGGCAGTTTATGGCGGGCGTCCTG‑CCCG‑CCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 2:349935/90‑1 (MQ=35) aaTTCCTGGCAGTTTATGGCGGGCGTCCTG‑CCCG‑CCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 2:304078/90‑1 (MQ=35) aaTTCCTGGCAGTTTATGGCGGGCGTCCTG‑CCCG‑CCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 2:299516/90‑1 (MQ=35) aaTTCCTGGCAGTTTATGGCGGGCGTCCTG‑CCCG‑CCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 1:128501/90‑1 (MQ=35) aaTTCCTGGCAGTTTATGGCGGGCGTCCTG‑CCCG‑CCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 2:222973/90‑1 (MQ=35) aaTTCCTGGCAGTTTATGGCGGGCGTCCTG‑CCCG‑CCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 2:195062/90‑1 (MQ=35) aaTTCCTGGCAGTTTATGGCGGGCGTCCTG‑CCCG‑CCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 2:187202/90‑1 (MQ=35) aaTTCCTGGCAGTTTATGGCGGGCGTCCTG‑CCCG‑CCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 1:61929/90‑1 (MQ=35) aaTTCCTGGCAGTTTATGGCGGGCGTCCTG‑CCCG‑CCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 1:48835/90‑1 (MQ=35) | CGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTG‑CCCG‑CCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCC > NZ_CP009273/360018‑360193 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |