| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 454255 | 45 (0.970) | 13 (0.290) | 9/160 | 1.8 | 23.3% | intergenic (+99/‑89) | clpX/lon | ATP‑dependent protease ATP‑binding subunit ClpX/endopeptidase La |
| ? | NZ_CP009273 | = 604803 | NA (NA) | intergenic (+170/+112) | BW25113_RS03025/entD | IS4‑like element IS421 family transposase/enterobactin synthase subunit EntD | |||||
CCCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGT‑GGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAATTAAACTAAGAGAGAGCTCT > NZ_CP009273/454166‑454343 | cccATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGT‑GGGGGAAACATCCC < 2:1259495‑M1/90‑1 (MQ=255)cccATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGT‑GGGGGAAACATCCC < 2:748682‑M1/90‑1 (MQ=255) aCAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGT‑GGGGGAAACATCCCCatat < 2:874806/90‑1 (MQ=255) aTTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGT‑GGGGGAAACATCCCataagcgc > 1:30709‑M1/1‑82 (MQ=255) aTTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGT‑GGGGGAAACATCCCCATATACt > 1:316060/1‑90 (MQ=255) aTTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGT‑GGGGGAAACATCCCCATATACt > 2:837119/1‑90 (MQ=255) aGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGGAAACATCCCCATATACTGa < 2:1116916/90‑1 (MQ=255) ttAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGT‑GGGGGAAACATCCCCATATACTGACGt < 1:928708/90‑1 (MQ=255) ttAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGT‑GGGGGAAACATCCCCATATACTGACGt < 1:433619/90‑1 (MQ=255) aaCCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGT‑GGGGGAAACATCCCCATATACTGACGTAc < 2:59167/90‑1 (MQ=255) aaCCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGT‑GGGGGAAACATCCCCATATACTGACGTAc < 1:15411/90‑1 (MQ=255) aaCCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGT‑GGGGGAAACATCCCCATATACTGACGTAc < 1:238907/90‑1 (MQ=255) taattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGGAAACATCCCCATATACTGAGGTAc > 2:191775‑M1/63‑90 (MQ=255) taattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGGAAACATCCCCATATACTGACGTAc > 2:443021‑M1/63‑90 (MQ=255) aCCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGT‑GGGGGAAACATCCCCATATACTGACGTACa > 2:952817/1‑90 (MQ=255) aaaaaGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGT‑GGGGGAAACATCCCCATATACTGACGTACATGt < 2:193073/90‑1 (MQ=255) ggggATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGT‑GGGGGAAACATCCCCATATACTGACGTAc < 2:1231924/79‑1 (MQ=255) ggggATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGT‑GGGGGAAACATCCCCATATACTGACGTAc > 1:1231924/1‑79 (MQ=255) ggggATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGT‑GGGGGAAACATCCCCATATACTGACGTACAt < 1:342932/81‑1 (MQ=255) ggggATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGT‑GGGGGAAACATCCCCATATACTGACGTACAt > 2:342932/1‑81 (MQ=255) gggATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGT‑GGGGGAAACATCCCataagcgcta > 1:993884‑M1/1‑63 (MQ=255) gggATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGT‑GGGGGAAACATCCCataagcgcta < 2:993884‑M1/73‑11 (MQ=255) tttATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGT‑GGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGt < 2:346424/90‑1 (MQ=255) tATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGT‑GGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGa > 1:330336/1‑90 (MQ=255) atcatatcaggcgtaataccacaacccttaagttagcgcttatGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGa > 1:889334‑M1/44‑90 (MQ=255) ctcCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGT‑GGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGc < 1:1246349/90‑1 (MQ=255) tcCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGT‑GGGGGAAACATCCCata < 1:393168‑M1/55‑4 (MQ=255) tcCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGT‑GGGGGAAACATCCCata > 2:393168‑M1/1‑52 (MQ=255) atatcaggcgtaataccacaacccttaagttagcgcttatGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGc > 2:426267‑M1/41‑90 (MQ=255) tatcaggcgtaataccacaacccttaagttagcgcttatGGGGAAACATCCCCATATACTGACGTACATGTTAATAGAt < 1:653183‑M1/40‑1 (MQ=255) tatcaggcgtaataccacaacccttaagttagcgcttatGGGGAAACATCCCCATATACTGACGTACATGTTAATAGAt > 2:653183‑M1/40‑79 (MQ=255) ccccTTTAATTTTTCCTCTATTCTCGGCGTTGAATGT‑GGGGGAAACATCCCataagcgctaacttaagggttgaaccatctgaagaatgc > 2:1363739‑M1/1‑51 (MQ=255) ccccTTTAATTTTTCCTCTATTCTCGGCGTTGAATGT‑GGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGcac > 2:594342/1‑90 (MQ=255) atcaggcgtaataccacaacccttaagttagcgcttatGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGcac > 1:903819‑M1/39‑90 (MQ=255) tttAATTTTTCCTCTATTCTCGGCGTTGAATGT‑GGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTc > 2:445508/1‑90 (MQ=255) ttAATTTTTCCTCTATTCTCGGCGTTGAATGT‑GGGGGAAACATCCCCa > 2:731669/1‑48 (MQ=255) ttAATTTTTCCTCTATTCTCGGCGTTGAATGT‑GGGGGAAACATCCCCa < 1:731669/48‑1 (MQ=255) ttAATTTTTCCTCTATTCTCGGCGTTGAATGT‑GGGGGAAACATCCCCa < 1:1176980/48‑1 (MQ=255) ttAATTTTTCCTCTATTCTCGGCGTTGAATGT‑GGGGGAAACATCCCCa > 2:1176980/1‑48 (MQ=255) ttttCCTCTATTCTCGGCGTTGAATGT‑GGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCa > 2:694601/1‑90 (MQ=255) ttCCTCTATTCTCGGCGTTGAATGT‑GGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATc < 1:366522/90‑1 (MQ=255) ccTCTATTCTCGGCGTTGAATGT‑GGGGGAAACATCCCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcc < 2:30709‑M1/90‑54 (MQ=255) acaacccttaagttagcgcttatGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGa < 1:1135453‑M1/67‑1 (MQ=255) ctATTCTCGGCGTTGAATGT‑GGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGAtt > 2:26669/1‑90 (MQ=255) tcGGCGTTGAATGT‑GGGGGAAACATCCCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaaga < 2:861598‑M1/90‑63 (MQ=255) cGGCGTTGAATGT‑GGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGc > 1:622148/1‑90 (MQ=255) cGGCGTTGAATGT‑GGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGc > 2:1072133/1‑90 (MQ=255) ggCGTTGAATGT‑GGGGGAAACATCCCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacg < 1:1363739‑M1/90‑65 (MQ=255) ttGAATGT‑GGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGaaa > 2:337804/1‑90 (MQ=255) ttGAATGT‑GGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGaaa > 1:1283109/1‑90 (MQ=255) agcgcttatGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGaaa < 2:1097298‑M1/81‑1 (MQ=255) gcgcttatGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAAt < 2:973796‑M1/82‑1 (MQ=255) gAATGT‑GGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAAtt < 1:594342/90‑1 (MQ=255) gAATGT‑GGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAAtt < 1:191937/90‑1 (MQ=255) gAACGT‑GGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAAtt < 2:695752/90‑1 (MQ=255) t‑gGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAATTAAACt < 1:1241645/90‑1 (MQ=255) GGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGa > 1:717806‑M1/1‑47 (MQ=255) GGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGa < 2:717806‑M1/47‑1 (MQ=255) gAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGc < 1:1245458/47‑1 (MQ=255) gAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGc > 2:1245458/1‑47 (MQ=255) aaCATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAATTAAACTAagagag < 1:910285/90‑1 (MQ=255) aCATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAATTAAACTAagagaga < 1:952817/90‑1 (MQ=255) aCATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAATTAAACTAagagaga < 2:1135453/90‑1 (MQ=255) cATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAATTAAACTAagagagag < 1:26669/90‑1 (MQ=255) aTCCCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcgcgttcttcaattg < 2:42069‑M1/90‑86 (MQ=255) aTCCCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcgcgttcttcaattg < 2:467868‑M1/90‑86 (MQ=255) aTCCCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcgcgttcttcaattg > 2:414489‑M1/1‑5 (MQ=255) aTCCCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcgcgttcttcaattg < 2:1279408‑M1/90‑86 (MQ=255) tCCCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcgcgttcttcaattgc > 1:623935‑M1/1‑4 (MQ=255) tCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAATTAAACTAAGAGAGAGct < 1:509083/90‑1 (MQ=255) tCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAATTAAACTAAGAGAGAGct < 1:694601/90‑1 (MQ=255) tCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAATTAAACTAAGAGAGAGct < 2:381552/90‑1 (MQ=255) tCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAATTAAACTAAGAGAGAGct < 1:813498/90‑1 (MQ=255) cccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcgcgttcttcaattgcg < 2:801929‑M1/90‑88 (MQ=255) cccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcgcgttcttcaattgcg > 2:1171019‑M1/1‑3 (MQ=255) ccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcgcgttcttcaattgcgt > 1:369262‑M1/1‑2 (MQ=255) cataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgc > 1:1123276‑M1/1‑1 (MQ=255) cataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgc < 2:1123276‑M1/53‑53 (MQ=255) cataagcgctaacttaagggttgaaccatctgaagaatgcgacgc > 1:1152147‑M1/1‑1 (MQ=255) cataagcgctaacttaagggttgaaccatctgaagaatgcgacgc < 2:1152147‑M1/45‑45 (MQ=255) | CCCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGT‑GGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAATTAAACTAAGAGAGAGCTCT > NZ_CP009273/454166‑454343 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |