| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,775,868 | 0 | A | C | 68.2% | 3.7 / 15.7 | 24 | V73G (GTA→GGA) | ypjA | adhesin‑like autotransporter YpjA/EhaD |
| Reads supporting (aligned to +/- strand): ref base A (6/1); new base C (0/15); total (7/17) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 9.38e-05 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.00e-04 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
TATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCTATATCTTGATATCCACCAGATTCAATAAGACTTCCATTAGATACCCCGCCATGAACATTCTGCTGGCCATGGTTGATAATATGAGTGTTATTTGTTGTACCTCGTTCATCCACTTTTTGGTTGCCA > NZ_CP009273/2775788‑2775951 | tattttTACCCTCCCCCAAAAAATTTTTATGCCTCCCTATATCTTGATACCCCCCAGATTCAATAAGCCTTCCATTAGATCCCCCGCCAt < 1:244966/90‑1 (MQ=255) attattAGCCTGCCCCACAAAATTGTTATGACTTCCTATATCTTGATATCCACCAGATTCAATAAGACTTCCATTAGATACCCCGCCATg > 1:174285/1‑90 (MQ=255) taGCCTCCCCCAAAAAATTGTTATGACTTCCTATATCTTGATACCCCCCAGATTCAATAAGACTTCCATTAGATCCCCCGCCATGAACAt < 2:620414/90‑1 (MQ=255) tGCCCCACAAAATTGTTATGACTTCCTATATCTTGATATCCACCAGATTCAATAAGACTTCCATTAGATCCCCCGCCATGAACATTctgc < 1:260392/90‑1 (MQ=255) gCCCCACAAAATTGTTATGACTTCCTATATCTTGATATCCACCAGATTCAATAAGACTTCCATTAGATACCCCGCCATGAACATTctgct > 2:110433/1‑90 (MQ=255) gCCCCACAAAATTGTTATGACTTCCTATATCTTGATATCCACCAGATTCAATAAGACTTCCATTAGATACCCCGCCATGAACATTctgct > 1:975237/1‑90 (MQ=255) acaAAATTGTTATGACTTCCTATATCTTGATATCCACCAGATTCAAT‑AGACTTCCATTAGATTCCCCGCCATGAACATTCTGCTGGCCAt > 1:359590/1‑90 (MQ=255) aaaaatTTTTTATGACTTCCTATATCTTAATACCCCCCAGATTAAAAAAGACTCCCATTAGATCCCCCGCCATGAACATTCTGCTGGCCa < 1:625304/88‑1 (MQ=255) ttATGTCTTCCTATATTTTGATTTCCCCCAGTTTCAATAAGCCTTCCATTAAATCCCCCGCCATGAACATTCTGCTGGCCATGGTTGata < 2:464668/90‑1 (MQ=255) ttATGACTTCCTATTTTTTGATTCCCCCCAGATTAAATAAGTCTTCCATTAGATCCCCCGCCATGAACATTCTGCTGGCCATGGTTGata < 1:521109/90‑1 (MQ=255) ccTTCCTATATCTTGATATCCCCCAGATTAAATAAGACTTCCATTAGATCCCCCGCCATGAACATTCTGCTGGCCATGGTTGATAATATg < 2:774736/89‑1 (MQ=255) ccTTCCTATATCTTGATATCCACCAGATTCAATAAGACTTCCATTAGATACCCCGCCATGAACATTCTGCTGGCCATGGTTGATAATATg < 1:3850/89‑1 (MQ=255) cTTCCTATATCTTGATATCCACCAGATTCAATAAGACTTCCATTAGATACCCCGCCATGAACATTCTGCTGGCCATGGTTGATAATATGa > 1:464668/1‑90 (MQ=255) ttCCTATATCTTGATATCCACCAGATTCAATAAGACTTCCATTAGATACCCCGCCATGAACATTCTGCTGGCCATGGTTGATAATATGAg > 1:773578/1‑90 (MQ=255) atatCTTGATATCCCCAAGATTAAATAAGCCTTCCATTAGATCCCCCGCCATGAACATTCTGCTGGCCATGGTTGATAATATGAGTGTTa < 1:756919/90‑1 (MQ=255) atacCTTAATACCCCCCAAATTCAAAAAGTCTCCCATTAGATCCCCCGCCATGAACATTCTGCTGGCCATGGTTGATAATATGAGTGTTa < 1:658442/90‑1 (MQ=255) atCTTGATATCCACCAGATTCAATAGGACTTCCATTAGATCCCCCGCCATGAACATTCTGCTGGCCATGGTTGATAATATGAGTGTTAtt < 2:351415/90‑1 (MQ=255) atCTTGATACCCACCAGATTCAAAAAGCCTTCCATTAGATCCCCCGCCATGAACATTCTGCTGGCCATGGTTGATAATATGAGTGTTAtt < 1:315048/90‑1 (MQ=255) gATATCCACCAGATTCAATAAGACTTCCATTAGATACCCCGCCATGAACATTCTGCTGGCCATGGTTGATAATATGAGTGTTATttgttg > 1:720801/1‑90 (MQ=255) ttCCATTAGATCCCCCGCCATGAACATTCTGCTGGCCATGGTTGATAATATGAGTGTTATTTGTTGTACCTCGTTCATCCACTTTTTGGt < 2:433905/90‑1 (MQ=255) ccATTAGATCCCCCGCCATGAACATTCTGCTGGCCATGGTTGATAATATGAGTGTTATTTGTTGTACCTCGTTCATCCACTTTTTGGTTg < 1:110433/90‑1 (MQ=255) ttAGATTCCCCGCCATGAACATTCTGCTGGCCATGGTTGATAATATGAGTGTTATTTGTTGTACCTCGTTCATCCACTTTTTGGTTGCCa < 2:359590/90‑1 (MQ=255) ttAGATCCCCCGCCATGAACATTCTGCTGGCCATGGTTGATAATATGAGTGTTATTTGTTGTACCTCGTTCATCCACTTTTTGGTTGCCa < 2:226737/90‑1 (MQ=255) ttAGATCCCCCGCCATGAACATTCTGCTGGCCATGGTTGATAATATGAGTGTTATTTGTTGTACCTCGTTCATCCACTTTTTGGTTGCCa < 2:975237/90‑1 (MQ=255) | TATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCTATATCTTGATATCCACCAGATTCAATAAGACTTCCATTAGATACCCCGCCATGAACATTCTGCTGGCCATGGTTGATAATATGAGTGTTATTTGTTGTACCTCGTTCATCCACTTTTTGGTTGCCA > NZ_CP009273/2775788‑2775951 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |