Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	579472	579477	6	2 [0]	[0] 2	appY	DNA‑binding transcriptional activator AppY

ATCCTTACTTGCCATGTTCAAAAAACGCGAAAGTGTAAAT  >  NZ_CP009273/579478‑579517 |                                        atCCTTACTTGCCATGTTCAAAAAACGCGAAAGTGTAAAt  >  1:482308/1‑40 (MQ=255) atCCTTACTTGCCATGTTCAAAAAACGCGAAAGTGTAAAt  <  2:482308/40‑1 (MQ=255) |                                        ATCCTTACTTGCCATGTTCAAAAAACGCGAAAGTGTAAAT  >  NZ_CP009273/579478‑579517

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑