Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1539068	1539185	118	2 [0]	[0] 3	BW25113_RS07710	leucine‑rich repeat domain‑containing protein

CTGAACATTGCAGAAGTTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAATAAGTAACGTATTCAAGTTGGGAAATAAGTC  >  NZ_CP009273/1539186‑1539275 |                                                                                          cTGAACATTGCAGAAGTTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAATAAGTaa                          >  1:332344/1‑66 (MQ=255) cTGAACATTGCAGAAGTTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAATAAGTaa                          <  2:332344/66‑1 (MQ=255) cTGAACATTGCAGAAGTTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAATAAGTAACGTATTCAAGTTGGGAAATAAGTc  >  1:225162/1‑90 (MQ=255) |                                                                                          CTGAACATTGCAGAAGTTGCTATAGAATATTTTAATTTCAGAAAGCAAATTGTTGTTAATAAGTAACGTATTCAAGTTGGGAAATAAGTC  >  NZ_CP009273/1539186‑1539275

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑